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Large Language Models (LLMs) have demonstrated strong capabilities in various natural language processing tasks; however, their application to graph-related problems remains limited, primarily due to scalability constraints and the absence…

Machine Learning · Computer Science 2025-05-08 Hyun Lee , Chris Yi , Maminur Islam , B. D. S. Aritra

The field of learning analytics has made notable strides in automating the detection of complex learning processes in multimodal data. However, most advancements have focused on individualized problem-solving instead of collaborative,…

Recent advancements in language modeling have led to the emergence of Large Language Models (LLMs) capable of various natural language processing tasks. Despite their success in text-based tasks, applying LLMs to the speech domain remains…

Computation and Language · Computer Science 2024-04-18 Pavel Denisov , Ngoc Thang Vu

Knowledge Representation Learning (KRL) is crucial for enabling applications of symbolic knowledge from Knowledge Graphs (KGs) to downstream tasks by projecting knowledge facts into vector spaces. Despite their effectiveness in modeling KG…

Computation and Language · Computer Science 2025-04-09 Xin Wang , Zirui Chen , Haofen Wang , Leong Hou U , Zhao Li , Wenbin Guo

Semiparametric language models (LMs) have shown promise in continuously learning from new text data by combining a parameterized neural LM with a growable non-parametric memory for memorizing new content. However, conventional…

Computation and Language · Computer Science 2023-03-03 Guangyue Peng , Tao Ge , Si-Qing Chen , Furu Wei , Houfeng Wang

Functional MRI (fMRI) and single-cell transcriptomics are pivotal in Alzheimer's disease (AD) research, each providing unique insights into neural function and molecular mechanisms. However, integrating these complementary modalities…

Quantitative Methods · Quantitative Biology 2025-02-06 Yu-An Huang , Yao Hu , Yue-Chao Li , Xiyue Cao , Xinyuan Li , Kay Chen Tan , Zhu-Hong You , Zhi-An Huang

Using a language model (LM) pretrained on two languages with large monolingual data in order to initialize an unsupervised neural machine translation (UNMT) system yields state-of-the-art results. When limited data is available for one…

Computation and Language · Computer Science 2020-10-07 Alexandra Chronopoulou , Dario Stojanovski , Alexander Fraser

Text-Based Person Search (TBPS) aims to retrieve target person images from a large-scale gallery using natural language descriptions, posing fundamental challenges in cross-modal representation learning. Existing methods often struggle to…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Jing Liu , Donglai Wei , Yang Liu , Sipeng Zhang , Tong Yang , Wei Zhou , Weiping Ding , Victor C. M. Leung

Sign language translation (SLT) is a challenging task that involves translating sign language images into spoken language. For SLT models to perform this task successfully, they must bridge the modality gap and identify subtle variations in…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Jungeun Kim , Hyeongwoo Jeon , Jongseong Bae , Ha Young Kim

Large language models (LLMs) show promise for supporting clinical decision-making in complex fields such as rheumatology. Our evaluation shows that smaller language models (SLMs), combined with retrieval-augmented generation (RAG), achieve…

Computation and Language · Computer Science 2025-07-11 Sabine Felde , Rüdiger Buchkremer , Gamal Chehab , Christian Thielscher , Jörg HW Distler , Matthias Schneider , Jutta G. Richter

Understanding biological processes, drug development, and biotechnological advancements requires a detailed analysis of protein structures and functions, a task that is inherently complex and time-consuming in traditional protein research.…

Artificial Intelligence · Computer Science 2025-04-21 Yijia Xiao , Edward Sun , Yiqiao Jin , Qifan Wang , Wei Wang

Large Multimodal Models (LMMs) have demonstrated exceptional performance across a wide range of domains. This paper explores their potential in pronunciation assessment tasks, with a particular focus on evaluating the capabilities of the…

Sound · Computer Science 2025-03-17 Ke Wang , Lei He , Kun Liu , Yan Deng , Wenning Wei , Sheng Zhao

Syntactic Language Models (SLMs) can be trained efficiently to reach relatively high performance; however, they have trouble with inference efficiency due to the explicit generation of syntactic structures. In this paper, we propose a new…

Computation and Language · Computer Science 2025-08-20 Ryo Yoshida , Taiga Someya , Yohei Oseki

The high incidence and mortality rates associated with respiratory diseases underscores the importance of early screening. Machine learning models can automate clinical consultations and auscultation, offering vital support in this area.…

Machine Learning · Computer Science 2024-10-10 Yuwei Zhang , Tong Xia , Aaqib Saeed , Cecilia Mascolo

The integration of single-cell proteomic data is often hindered by the fragmented nature of targeted antibody panels. To address this limitation, we introduce scpFormer, a transformer-based foundation model designed for single-cell…

Quantitative Methods · Quantitative Biology 2026-04-23 Qifeng Zhou , Lei Yu , Yuzhi Guo , Yuwei Miao , Hehuan Ma , Wenliang Zhong , Lin Xu , Junzhou Huang

Self-supervised learning (SSL) has been successful in building patch embeddings of small histology images (e.g., 224x224 pixels), but scaling these models to learn slide embeddings from the entirety of giga-pixel whole-slide images (WSIs)…

Computer Vision and Pattern Recognition · Computer Science 2024-05-21 Guillaume Jaume , Lukas Oldenburg , Anurag Vaidya , Richard J. Chen , Drew F. K. Williamson , Thomas Peeters , Andrew H. Song , Faisal Mahmood

Learning effective protein representations is critical in a variety of tasks in biology such as predicting protein functions. Recent sequence representation learning methods based on Protein Language Models (PLMs) excel in sequence-based…

Quantitative Methods · Quantitative Biology 2023-10-19 Zuobai Zhang , Chuanrui Wang , Minghao Xu , Vijil Chenthamarakshan , Aurélie Lozano , Payel Das , Jian Tang

While originally designed for unidirectional generative modeling, decoder-only large language models (LLMs) are increasingly being adapted for bidirectional modeling. However, unidirectional and bidirectional models are typically trained…

Computation and Language · Computer Science 2025-02-17 Savya Khosla , Aditi Tiwari , Kushal Kafle , Simon Jenni , Handong Zhao , John Collomosse , Jing Shi

A rising interest in the modality extension of foundation language models warrants discussion on the most effective, and efficient, multimodal training approach. This work focuses on neural machine translation (NMT) and proposes a joint…

Single-cell RNA sequencing (scRNA-seq) enables transcriptomic profiling at cellular resolution but suffers from pervasive dropout events that obscure biological signals. We present SCR-MF, a modular two-stage workflow that combines…

Machine Learning · Computer Science 2025-11-24 Ali Anaissi , Deshao Liu , Yuanzhe Jia , Weidong Huang , Widad Alyassine , Junaid Akram
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