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Attempting to recognize a tree inside a phylogenetic network is a fundamental undertaking in evolutionary analysis. In the last few years, therefore, tree-based phylogenetic networks, which are defined by a spanning tree called a…

Combinatorics · Mathematics 2020-09-29 Momoko Hayamizu

This paper analyses a nonlinear age-maturity structured system which arises as a model of the blood cellular production in the bone marrow. The resulting model is a nonlinear first-order partial differential equation in which there is a…

Analysis of PDEs · Mathematics 2009-04-17 Mostafa Adimy , Fabien Crauste

Recurrently coupled oscillators that are sufficiently heterogeneous and/or randomly coupled can show an asynchronous activity in which there are no significant correlations among the units of the network. The asynchronous state can…

Neurons and Cognition · Quantitative Biology 2023-05-03 Jonas Ranft , Benjamin Lindner

We consider artificial neurons which will update their weight coefficients with an internal rule based on backpropagation, rather than using it as an external training procedure. To achieve this we include the backpropagation error estimate…

Neural and Evolutionary Computing · Computer Science 2018-08-07 M. N. Nazarov

We introduce a dynamical spatio-temporal model formalized as a recurrent neural network for forecasting time series of spatial processes, i.e. series of observations sharing temporal and spatial dependencies. The model learns these…

Machine Learning · Computer Science 2018-04-24 Ali Ziat , Edouard Delasalles , Ludovic Denoyer , Patrick Gallinari

We propose a method of constructing a network, in which its time structure is directly incorporated, based on a deterministic model from a time series. To construct such a network, we transform a linear model containing terms with different…

Other Statistics · Statistics 2015-06-05 Tomomichi Nakamura , Toshihiro Tanizawa

In deep learning, dense layer connectivity has become a key design principle in deep neural networks (DNNs), enabling efficient information flow and strong performance across a range of applications. In this work, we model densely connected…

Machine Learning · Computer Science 2025-10-03 Jinshu Huang , Haibin Su , Xue-Cheng Tai , Chunlin Wu

We introduce a microscopic spiking network consistent with the age-structured/renewal equation proposed by Pakdaman, Perthame and Salort. It is a jump process interacting through a global activity variable with random delays. We show the…

Analysis of PDEs · Mathematics 2015-03-03 Cristóbal Quiñinao

Dynamical networks with time delays can pose a considerable challenge for mathematical analysis. Here, we extend the approach of generalized modeling to investigate the stability of large networks of delay-coupled delay oscillators. When…

Disordered Systems and Neural Networks · Physics 2011-11-11 Johannes M. Höfener , Gautam C. Sethia , Thilo Gross

Recurrent neural networks (RNNs) are nonlinear dynamical models commonly used in the machine learning and dynamical systems literature to represent complex dynamical or sequential relationships between variables. More recently, as deep…

Methodology · Statistics 2018-02-08 Patrick L. McDermott , Christopher K. Wikle

Capacity analysis has been recently introduced as a way to analyze how linear models distribute their modelling capacity across the input space. In this paper, we extend the notion of capacity allocation to the case of neural networks with…

Machine Learning · Computer Science 2019-02-28 Jonathan Donier

We minimize a linear combination of the Willmore and the length functional among networks in $\mathbb{R}^d$ belonging to a given class determined by the number of curves, the order of the junctions and the angles between curves at the…

Optimization and Control · Mathematics 2021-09-30 Giacomo Del Nin , Alessandra Pluda , Marco Pozzetta

We extend the theory of spectral submanifolds (SSMs) to general non-autonomous dynamical systems that are either weakly forced or slowly varying. Examples of such systems arise in structural dynamics, fluid-structure interactions and…

Dynamical Systems · Mathematics 2024-04-09 George Haller , Roshan S. Kaundinya

A key attribute that drives the unprecedented success of modern Recurrent Neural Networks (RNNs) on learning tasks which involve sequential data, is their ability to model intricate long-term temporal dependencies. However, a well…

Machine Learning · Computer Science 2018-06-07 Yoav Levine , Or Sharir , Alon Ziv , Amnon Shashua

Biological neural networks exist in physical space where distance influences communication delays: a fundamental coupling between space and time absent in most artificial neural networks. While recent work has separately explored spatial…

Neural and Evolutionary Computing · Computer Science 2026-01-27 Balázs Mészáros , James C. Knight , Danyal Akarca , Thomas Nowotny

This work examines the problem of topology inference over discrete-time nonlinear stochastic networked dynamical systems. The goal is to recover the underlying digraph linking the network agents, from observations of their state-evolution.…

Multiagent Systems · Computer Science 2019-06-24 Augusto Santos , Vincenzo Matta , Ali H. Sayed

Deep learning models are increasingly deployed in safety-critical tasks where predictions must satisfy hard constraints, such as physical laws, fairness requirements, or safety limits. However, standard architectures lack built-in…

Machine Learning · Computer Science 2025-11-26 Gonzalo E. Constante-Flores , Hao Chen , Can Li

The goal of this note is to present a general approach to define the net reproduction function for a large class of nonlinear physiologically structured population models. In particular, we are going to show that this can be achieved in a…

Populations and Evolution · Quantitative Biology 2019-03-06 József Z. Farkas

Time lags occur in a vast range of real-world dynamical systems due to finite reaction times or propagation speeds. Here we derive an analytical approach to determine the asymptotic stability of synchronous states in networks of coupled…

Dynamical Systems · Mathematics 2020-07-08 Reyk Börner , Paul Schultz , Benjamin Ünzelmann , Deli Wang , Frank Hellmann , Jürgen Kurths

Elucidating the neurophysiological mechanisms underlying neural pattern formation remains an outstanding challenge in Computational Neuroscience. In this paper, we address the issue of understanding the emergence of neural patterns by…

Neurons and Cognition · Quantitative Biology 2024-06-04 Gregory Dumont , Carmen Oana Tarniceriu