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We present a novel learning framework that consistently embeds underlying physics while bypassing a significant drawback of most modern, data-driven coarse-grained approaches in the context of molecular dynamics (MD), i.e., the availability…

Machine Learning · Computer Science 2020-02-25 Markus Schöberl , Nicholas Zabaras , Phaedon-Stelios Koutsourelakis

In silico design of new molecules and materials with desirable quantum properties by high-throughput screening is a major challenge due to the high dimensionality of chemical space. To facilitate its navigation, we present a unification of…

Chemical Physics · Physics 2018-10-02 Stijn Fias , K. Y. Samuel Chang , O. Anatole von Lilienfeld

Restricted Boltzmann Machines (RBMs) are general unsupervised learning devices to ascertain generative models of data distributions. RBMs are often trained using the Contrastive Divergence learning algorithm (CD), an approximation to the…

Neural and Evolutionary Computing · Computer Science 2015-07-27 E. Romero , F. Mazzanti , J. Delgado

Language models are revolutionizing the biochemistry domain, assisting scientists in drug design and chemical synthesis with high efficiency. Yet current approaches struggle between small language models prone to hallucination and limited…

Machine Learning · Computer Science 2026-02-02 Hao Li , He Cao , Shenyao Peng , Zijing Liu , Bin Feng , Yu Wang , Zhiyuan Yan , Yonghong Tian , Yu Li , Li Yuan

Data-driven machine learning methods have the potential to dramatically accelerate the rate of materials design over conventional human-guided approaches. These methods would help identify or, in the case of generative models, even create…

Materials Science · Physics 2022-07-28 Victor Fung , Shuyi Jia , Jiaxin Zhang , Sirui Bi , Junqi Yin , P. Ganesh

We present a novel approach for improving the design of ansatzes in Quantum Generative Adversarial Networks (qGANs) by leveraging Large Language Models (LLMs). By combining the strengths of LLMs with qGANs, our approach iteratively refines…

Quantum Physics · Physics 2025-03-18 Kento Ueda , Atsushi Matsuo

The Extreme Learning Machine (ELM) is a single-hidden layer feedforward neural network (SLFN) learning algorithm that can learn effectively and quickly. The ELM training phase assigns the input weights and bias randomly and does not change…

Neural and Evolutionary Computing · Computer Science 2017-08-18 Andre Pacheco , Renato Krohling , Carlos da Silva

Probabilistic generative deep learning for molecular design involves the discovery and design of new molecules and analysis of their structure, properties and activities by probabilistic generative models using the deep learning approach.…

Machine Learning · Computer Science 2019-02-15 Daniel T. Chang

Machine learning techniques paired with the availability of massive datasets dramatically enhance our ability to explore the chemical compound space by providing fast and accurate predictions of molecular properties. However, learning on…

This work analyzes centered binary Restricted Boltzmann Machines (RBMs) and binary Deep Boltzmann Machines (DBMs), where centering is done by subtracting offset values from visible and hidden variables. We show analytically that (i)…

Machine Learning · Statistics 2017-02-08 Jan Melchior , Asja Fischer , Laurenz Wiskott

Deep generative modeling to stochastically design small molecules is an emerging technology for accelerating drug discovery and development. However, one major issue in molecular generative models is their lower frequency of drug-like…

We show that Restricted Boltzmann Machines (RBMs) provide a flexible generative framework for modeling spin configurations in disordered yet strongly correlated phases of frustrated magnets. As a benchmark, we first demonstrate that an RBM…

Strongly Correlated Electrons · Physics 2026-02-19 Ho Jang , Jackson C. Glass , Gia-Wei Chern

Restricted Boltzmann machines (RBMs) constitute one of the main models for machine statistical inference and they are widely employed in Artificial Intelligence as powerful tools for (deep) learning. However, in contrast with countless…

Disordered Systems and Neural Networks · Physics 2019-03-12 Elena Agliari , Adriano Barra , Brunello Tirozzi

Chemical reaction prediction is pivotal for accelerating drug discovery and synthesis planning. Despite advances in data-driven models, current approaches are hindered by an overemphasis on parameter and dataset scaling. Some methods…

Machine Learning · Computer Science 2026-03-04 Ran Li , Shimin Di , Haowei LI , Luanshi Bu , Jiachuan Wang , Wangze Ni , Lei Chen

The paper focuses on the a posteriori tuning of a generative model in order to favor the generation of good instances in the sense of some external differentiable criterion. The proposed approach, called Boltzmann Tuning of Generative…

Artificial Intelligence · Computer Science 2021-04-13 Victor Berger , Michele Sebag

Using conservation of energy - a fundamental property of closed classical and quantum mechanical systems - we develop an efficient gradient-domain machine learning (GDML) approach to construct accurate molecular force fields using a…

In this article we provide a method for fully quantum generative training of quantum Boltzmann machines with both visible and hidden units while using quantum relative entropy as an objective. This is significant because prior methods were…

Quantum Physics · Physics 2019-05-27 Nathan Wiebe , Leonard Wossnig

We introduce an unsupervised clustering algorithm to improve training efficiency and accuracy in predicting energies using molecular-orbital-based machine learning (MOB-ML). This work determines clusters via the Gaussian mixture model (GMM)…

Chemical Physics · Physics 2023-03-28 Lixue Cheng , Jiace Sun , Thomas F. Miller

Computing equilibrium states in condensed-matter many-body systems, such as solvated proteins, is a long-standing challenge. Lacking methods for generating statistically independent equilibrium samples in "one shot", vast computational…

Machine Learning · Statistics 2019-07-15 Frank Noé , Simon Olsson , Jonas Köhler , Hao Wu

The demand for a huge amount of data for machine learning (ML) applications is currently a bottleneck in an empirically dominated field. We propose a method to combine prior knowledge with data-driven methods to significantly reduce their…

Machine Learning · Computer Science 2023-03-06 Xia Chen , Manav Mahan Singh , Philipp Geyer
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