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Predicting drug side-effects before they occur is a key task in keeping the number of drug-related hospitalizations low and to improve drug discovery processes. Automatic predictors of side-effects generally are not able to process the…

Machine Learning · Statistics 2022-12-01 Pietro Bongini , Elisa Messori , Niccolò Pancino , Monica Bianchini

The autonomous driving (AD) industry is exploring the use of knowledge graphs (KGs) to manage the vast amount of heterogeneous data generated from vehicular sensors. The various types of equipped sensors include video, LIDAR and RADAR.…

Artificial Intelligence · Computer Science 2020-03-03 Ruwan Wickramarachchi , Cory Henson , Amit Sheth

Most existing knowledge graphs suffer from incompleteness. Embedding knowledge graphs into continuous vector spaces has recently attracted increasing interest in knowledge base completion. However, in most existing embedding methods, only…

Information Retrieval · Computer Science 2020-11-18 Zhenghao Zhang , Jianbin Huang , Qinglin Tan

Explainable ML for molecular toxicity prediction is a promising approach for efficient drug development and chemical safety. A predictive ML model of toxicity can reduce experimental cost and time while mitigating ethical concerns by…

Quantitative Methods · Quantitative Biology 2022-04-15 Bhanushee Sharma , Vijil Chenthamarakshan , Amit Dhurandhar , Shiranee Pereira , James A. Hendler , Jonathan S. Dordick , Payel Das

The paper addresses challenges in storing and retrieving sequences in contexts like anomaly detection, behavior prediction, and genetic information analysis. Associative Knowledge Graphs (AKGs) offer a promising approach by leveraging…

Artificial Intelligence · Computer Science 2025-09-11 Przemysław Stokłosa , Janusz A. Starzyk , Paweł Raif , Adrian Horzyk , Marcin Kowalik

Drug discovery remains a slow and expensive process that involves many steps, from detecting the target structure to obtaining approval from the Food and Drug Administration (FDA), and is often riddled with safety concerns. Accurate…

Quantitative Methods · Quantitative Biology 2025-08-22 Ali Vefghi , Zahed Rahmati , Mohammad Akbari

Trajectory data has become a key resource for automated map in-ference due to its low cost, broad coverage, and continuous availability. However, uneven trajectory density often leads to frag-mented roads in sparse areas and redundant…

Computer Vision and Pattern Recognition · Computer Science 2025-09-16 Yudong Shen , Wenyu Wu , Jiali Mao , Yixiao Tong , Guoping Liu , Chaoya Wang

Learning causal relationships solely from observational data often fails to reveal the underlying causal mechanisms due to the vast search space of possible causal graphs, which can grow exponentially, especially for greedy algorithms using…

Artificial Intelligence · Computer Science 2024-07-09 Uzma Hasan , Md Osman Gani

Selecting which instances to label is a key challenge in low-label tabular learning. For recent Tabular Foundation Models such as TabPFN, context selection directly determines predictive performance. Supervised oracle experiments show that…

Machine Learning · Computer Science 2026-05-27 Oroel Ipas , Guillermo Gomez-Trenado , Rocío Romero-Zaliz , Isaac Triguero

Inferring causal relationships between variable pairs is crucial for understanding multivariate interactions in complex systems. Knowledge-based causal discovery -- which involves inferring causal relationships by reasoning over the…

Artificial Intelligence · Computer Science 2025-06-11 Yuni Susanti , Michael Färber

Most existing re-identification methods focus on learning robust and discriminative features with deep convolution networks. However, many of them consider content similarity separately and fail to utilize the context information of the…

Computer Vision and Pattern Recognition · Computer Science 2021-03-18 Deyi Ji , Haoran Wang , Hanzhe Hu , Weihao Gan , Wei Wu , Junjie Yan

Subsampling is effective in Knowledge Graph Embedding (KGE) for reducing overfitting caused by the sparsity in Knowledge Graph (KG) datasets. However, current subsampling approaches consider only frequencies of queries that consist of…

Computation and Language · Computer Science 2024-04-15 Xincan Feng , Hidetaka Kamigaito , Katsuhiko Hayashi , Taro Watanabe

Machine-generated texts (MGTs) pose risks such as disinformation and phishing, underscoring the need for reliable detection. Metric-based methods, which extract statistically distinguishable features of MGTs, are often more practical than…

Computation and Language · Computer Science 2026-05-18 Chenwang Wu , Yiuming Cheung , Bo Han , Shuhai Zhang , Defu Lian

Coreference resolution across multiple documents poses a significant challenge in natural language processing, particularly within the domain of knowledge graphs. This study introduces an innovative method aimed at identifying and resolving…

Computation and Language · Computer Science 2025-04-09 Zhang Dong , Mingbang Wang , Songhang deng , Le Dai , Jiyuan Li , Xingzu Liu , Ruilin Nong

Despite being the go-to choice for link prediction on knowledge graphs, research on interpretability of knowledge graph embeddings (KGE) has been relatively unexplored. We present KGEx, a novel post-hoc method that explains individual link…

Artificial Intelligence · Computer Science 2023-10-03 Vasileios Baltatzis , Luca Costabello

Interaction between pharmacological agents can trigger unexpected adverse events. Capturing richer and more comprehensive information about drug-drug interactions (DDI) is one of the key tasks in public health and drug development.…

Machine Learning · Computer Science 2020-10-19 Yuanfei Dai , Chenhao Guo , Wenzhong Guo , Carsten Eickhoff

Knowledge graphs (KGs) are powerful tools for modelling complex, multi-relational data and supporting hypothesis generation, particularly in applications like drug repurposing. However, for predictive methods to gain acceptance as credible…

Artificial Intelligence · Computer Science 2026-02-06 Susana Nunes , Samy Badreddine , Catia Pesquita

Recent advances in large language models have demonstrated considerable potential in scientific domains such as drug repositioning. However, their effectiveness remains constrained when reasoning extends beyond the knowledge acquired during…

Artificial Intelligence · Computer Science 2025-08-01 Zerui Yang , Yuwei Wan , Siyu Yan , Yudai Matsuda , Tong Xie , Bram Hoex , Linqi Song

Knowledge graphs offer a structured representation of real-world entities and their relationships, enabling a wide range of applications from information retrieval to automated reasoning. In this paper, we conduct a systematic comparison…

Machine Learning · Computer Science 2025-07-31 Thanh Hoang-Minh

Social networks are vital for information sharing, especially in the health sector for discussing diseases and treatments. These platforms, however, often feature posts as brief texts, posing challenges for Artificial Intelligence (AI) in…