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We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale…

Algebraic Topology · Mathematics 2024-05-24 Michael Kerber , Florian Russold

In the persistent homology of filtrations, the indecomposable decompositions provide the persistence diagrams. However, in almost all cases of multidimensional persistence, the classification of all indecomposable modules is known to be a…

Representation Theory · Mathematics 2021-05-25 Hideto Asashiba , Mickaël Buchet , Emerson G. Escolar , Ken Nakashima , Michio Yoshiwaki

How to efficiently represent a graph in computer memory is a fundamental data structuring question. In the present paper, we address this question from a combinatorial point of view. A representation of an $n$-vertex graph $G$ is called…

Combinatorics · Mathematics 2023-03-09 Bogdan Alecu , Vladimir E. Alekseev , Aistis Atminas , Vadim Lozin , Viktor Zamaraev

While stabilizer tableaus have proven exceptionally useful as a descriptive tool for additive quantum codes, they offer little guidance for concrete constructions or coding algorithm analysis. We introduce a representation of stabilizer…

Quantum Physics · Physics 2025-01-31 Andrey Boris Khesin

Dey and Xin (J.Appl.Comput.Top., 2022, arXiv:1904.03766) describe an algorithm to decompose finitely presented multiparameter persistence modules using a matrix reduction algorithm. Their algorithm only works for modules whose generators…

Representation Theory · Mathematics 2025-11-25 Tamal K. Dey , Jan Jendrysiak , Michael Kerber

We first introduce the notion of meta-rank for a 2-parameter persistence module, an invariant that captures the information behind images of morphisms between 1D slices of the module. We then define the meta-diagram of a 2-parameter…

Algebraic Topology · Mathematics 2023-03-16 Nate Clause , Tamal K. Dey , Facundo Mémoli , Bei Wang

This article aims to study the topological invariant properties encoded in node graph representational embeddings by utilizing tools available in persistent homology. Specifically, given a node embedding representation algorithm, we…

Machine Learning · Computer Science 2021-10-12 Mustafa Hajij , Ghada Zamzmi , Xuanting Cai

While stabilizer tableaus have proven useful as a descriptive tool for additive quantum codes, they otherwise offer little guidance for concrete constructions or algorithm analysis. We introduce a representation of stabilizer codes as…

Quantum Physics · Physics 2025-11-10 Andrey Boris Khesin , Jonathan Z. Lu , Peter W. Shor

The persistence diagram (PD) is an increasingly popular topological descriptor. By encoding the size and prominence of topological features at varying scales, the PD provides important geometric and topological information about a space.…

The demand of two-dimensional source coding and constrained coding has been getting higher these days, but compared to the one-dimensional case, many problems have remained open as the analysis is cumbersome. A main reason for that would be…

Information Theory · Computer Science 2016-02-03 Takahiro Ota , Akiko Manada , Hiroyoshi Morita

With the rising interest in graph representation learning, a variety of approaches have been proposed to effectively capture a graph's properties. While these approaches have improved performance in graph machine learning tasks compared to…

Machine Learning · Computer Science 2019-10-09 Antonia Gogoglou , C. Bayan Bruss , Keegan E. Hines

Mesh models are a promising approach for encoding the structure of 3D objects. Current mesh reconstruction systems predict uniformly distributed vertex locations of a predetermined graph through a series of graph convolutions, leading to…

Computer Vision and Pattern Recognition · Computer Science 2019-02-01 Edward J. Smith , Scott Fujimoto , Adriana Romero , David Meger

Proposing an effective and flexible matrix to represent a graph is a fundamental challenge that has been explored from multiple perspectives, e.g., filtering in Graph Fourier Transforms. In this work, we develop a novel and general…

Machine Learning · Computer Science 2023-05-11 Mingqi Yang , Wenjie Feng , Yanming Shen , Bryan Hooi

Machine learning on graphs is an important and ubiquitous task with applications ranging from drug design to friendship recommendation in social networks. The primary challenge in this domain is finding a way to represent, or encode, graph…

Social and Information Networks · Computer Science 2018-04-11 William L. Hamilton , Rex Ying , Jure Leskovec

Persistent homology, a technique from computational topology, has recently shown strong empirical performance in the context of graph classification. Being able to capture long range graph properties via higher-order topological features,…

Machine Learning · Computer Science 2024-12-20 Rubén Ballester , Bastian Rieck

Graph representation learning has many real-world applications, from super-resolution imaging, 3D computer vision to drug repurposing, protein classification, social networks analysis. An adequate representation of graph data is vital to…

Machine Learning · Computer Science 2021-12-17 Xuebin Zheng , Bingxin Zhou , Yu Guang Wang , Xiaosheng Zhuang

The representation of graphs is commonly based on the adjacency matrix concept. This formulation is the foundation of most algebraic and computational approaches to graph processing. The advent of deep learning language models offers a wide…

Artificial Intelligence · Computer Science 2025-12-16 Ezequiel Lopez-Rubio

We present a new graph compressor that works by recursively detecting repeated substructures and representing them through grammar rules. We show that for a large number of graphs the compressor obtains smaller representations than other…

Data Structures and Algorithms · Computer Science 2017-04-19 Sebastian Maneth , Fabian Peternek

Geometric modeling by constraints, whose applications are of interest to communities from various fields such as mechanical engineering, computer aided design, symbolic computation or molecular chemistry, is now integrated into standard…

Computational Geometry · Computer Science 2018-03-06 Samy Ait-Aoudia , Adel Moussaoui , Khaled Abid , Dominique Michelucci

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

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