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Brownian particles interacting sequentially with distinct temperatures and driving forces at each stroke have been tackled as a reliable alternative for the construction of engine setups. However they can behave very inefficiently depending…

Statistical Mechanics · Physics 2022-12-28 Iago N. Mamede , Angel L. L. Stable , C. E. Fiore

Biological molecular machines are proteins that operate under isothermal conditions hence are referred to as free energy transducers. They can be formally considered as enzymes that simultaneously catalyze two chemical reactions: the free…

Biological Physics · Physics 2014-02-05 Michal Kurzynski , Mieczyslaw Torchala , Przemyslaw Chelminiak

Biological molecular machines are bifunctional enzymes that catalyze two processes: one donating free energy and the other accepting it. Recent studies show that most protein enzymes have rich stochastic dynamics of transitions between the…

Biological Physics · Physics 2023-02-02 Michal Kurzynski , Przemyslaw Chelminiak

We analyze a steady-state thermoelectric engine, whose working substance consists of two capacitively coupled quantum dots. One dot is tunnel-coupled to a hot reservoir serving as a heat source, the other one to two electrically biased…

Quantum Physics · Physics 2021-02-10 R David Mayrhofer , Cyril Elouard , Janine Splettstoesser , Andrew N Jordan

We have performed an extensive analysis of a single particle stochastic heat engine constructed by manipulating a Brownian particle in a time dependent harmonic potential. The cycle consists of two isothermal steps at different temperatures…

Statistical Mechanics · Physics 2014-12-01 Shubhashis Rana , P. S. Pal , Arnab Saha , A. M. Jayannavar

The performance of a molecular motor, characterized by its power output and energy efficiency, is investigated in the motor design space spanned by the stepping rate function and the motor-track interaction potential. Analytic results and…

Soft Condensed Matter · Physics 2018-03-14 Yuhai Tu , Yuansheng Cao

The cytoskeleton in eukaryotic cells plays several crucial roles. In terms of intracellular transport, motor proteins use the cytoskeletal filaments as a backbone along which they can actively transport biological cargos such as vesicles…

Biological Physics · Physics 2020-06-20 Adélaïde Raguin , Norbert Kern , Andrea Parmeggiani

When engineering microscopic machines, increasing efficiency can often come at a price of reduced reliability due to the impact of stochastic fluctuations. Here we develop a general method for performing multi-objective optimisation of…

Quantum Physics · Physics 2021-01-04 Harry J. D. Miller , Mohammad Mehboudi

Molecular motors play pivotal roles in organizing the interior of cells. A motor efficient in cargo transport would move along cytoskeletal filaments with a high speed and a minimal error in transport distance (or time) while consuming a…

Biological Physics · Physics 2019-06-07 Wonseok Hwang , Changbong Hyeon

Biological transport is supported by collective dynamics of enzymatic molecules that are called motor proteins or molecular motors. Experiments suggest that motor proteins interact locally via short-range potentials. We investigate the…

Statistical Mechanics · Physics 2015-06-18 Hamid Teimouri , Anatoly B. Kolomeisky , Kareem Mehrabiani

We experimentally demonstrate a nano-scale stochastic Stirling heat engine operating in the underdamped regime. The setup involves an optically levitated silica particle that is subjected to a power-varying optical trap and periodically…

Molecular motors are known to have the high efficiency of energy transformation in the presence of thermal fluctuation. Motivated by the surprising fact, recent studies of thermal ratchet models are showing how and when work should be…

Soft Condensed Matter · Physics 2009-10-31 Hideki Kamegawa , Tsuyoshi Hondou , Fumiko Takagi

Hydrodynamic flows are often generated in colloidal suspensions. Since colloidal particles are frequently used to construct stochastic heat engines, we study how the hydrodynamic flows influence the output parameters of the engine. We study…

Statistical Mechanics · Physics 2025-04-15 P. S. Pal , Sourabh Lahiri , Arnab Saha

We propose a dynamic mechanism of a molecular machine for energy conversion, by considering a simple model describing the dynamics of two components, the head and the chain. After injection of energy to the head region, the energy is stored…

Condensed Matter · Physics 2007-05-23 Naoko Nakagawa , Kunihiko Kaneko

We realize a heat engine using a single electron spin as a working medium. The spin pertains to the valence electron of a trapped $^{40}$Ca$^+$ ion, and heat reservoirs are emulated by controlling the spin polarization via optical pumping.…

Protein translation is a multistep process which can be represented as a cascade of biochemical reactions (initiation, ribosome assembly, elongation, etc.), the rate of which can be regulated by small non-coding microRNAs through multiple…

Molecular Networks · Quantitative Biology 2010-03-09 Andrei Zinovyev , Nadya Morozova , Nora Nonne , Emmanuel Barillot , Annick Harel-Bellan , Alexander N. Gorban

At the dawn of thermodynamics, Carnot's constraint on efficiency of heat engines stimulated the formulation of one of the most universal physical principles, the second law of thermodynamics. In recent years, the field of heat engines…

Statistical Mechanics · Physics 2021-12-23 Viktor Holubec , Artem Ryabov

It is shown that a small subset of modes which are likely to be involved in protein functional motions of large amplitude can be determined by retaining the most robust normal modes obtained using different protein models. This result…

Biomolecules · Quantitative Biology 2007-05-23 Samuel Nicolay , Yves-Henri Sanejouand

Modern technologies could soon make it possible to investigate the operation cycles of quantum heat engines by counting the photons that are emitted and absorbed by their working systems. Using the quantum jump approach to open-system…

Statistical Mechanics · Physics 2020-09-29 Paul Menczel , Christian Flindt , Kay Brandner

Emergence, optimization and stability of a motor-like motion in a fluctuating environment are analyzed. The emergence of motion is shown to be a general phenomenon. A motor converges to the state with the minimum of effective temperature…

Statistical Mechanics · Physics 2013-12-19 Alexander Feigel , Asaf Rozen
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