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We present a computational framework that integrates functional-structural plant modeling (FSPM) with an evolutionary algorithm to optimize three-dimensional maize canopy architecture for enhanced light interception under high-density…

Quantitative Methods · Quantitative Biology 2025-12-15 Nasla Saleem , Talukder Zaki Jubery , Yan Zhou , Yawei Li , Adarsh Krishnamurthy , Patrick S. Schnable , Baskar Ganapathysubramanian

Recent advances in plant phenotyping have driven widespread adoption of multi sensor platforms for collecting crop canopy reflectance data. This includes the collection of heterogeneous data across multiple platforms, with Unmanned Aerial…

Computer Vision and Pattern Recognition · Computer Science 2025-11-21 Timilehin T. Ayanlade , Anirudha Powadi , Talukder Z. Jubery , Baskar Ganapathysubramanian , Soumik Sarkar

The use of multiple camera technologies in a combined multimodal monitoring system for plant phenotyping offers promising benefits. Compared to configurations that only utilize a single camera technology, cross-modal patterns can be…

Computer Vision and Pattern Recognition · Computer Science 2024-07-04 Eric Stumpe , Gernot Bodner , Francesco Flagiello , Matthias Zeppelzauer

The application of spectral-shifting films in greenhouses to shift green light to red light has shown variable growth responses across crop species. However, the yield enhancement of crops under altered light quality is related to the…

Quantitative Methods · Quantitative Biology 2025-11-20 Jun Hyeun Kang , Jung Eek Son , Tae In Ahn

Quantitative descriptions of the complete canopy architecture are essential for accurately evaluating crop photosynthesis and yield performance to guide ideotype design. Although various sensing technologies have been developed for…

Computer Vision and Pattern Recognition · Computer Science 2025-08-04 Ziyue Guo , Xin Yang , Yutao Shen , Yang Zhu , Lixi Jiang , Haiyan Cen

We present an open-source, low-cost photogrammetry system for 3D plant modeling and phenotyping. The system uses a structure-from-motion approach to reconstruct 3D representations of the plants via point clouds. Using wheat as an example,…

Computer Vision and Pattern Recognition · Computer Science 2025-04-24 Joe Hrzich , Michael A. Beck , Christopher P. Bidinosti , Christopher J. Henry , Kalhari Manawasinghe , Karen Tanino

Quantification of physiological changes in plants can capture different drought mechanisms and assist in selection of tolerant varieties in a high throughput manner. In this context, an accurate 3D model of plant canopy provides a reliable…

Computer Vision and Pattern Recognition · Computer Science 2017-10-19 Siddharth Srivastava , Swati Bhugra , Brejesh Lall , Santanu Chaudhury

Vertical farming is a controlled-environment agriculture (CEA) approach in which crops are grown in stacked layers under regulated climate and lighting, enabling predictable production but requiring high electricity input. This study…

Systems and Control · Electrical Eng. & Systems 2026-03-18 Francesco Ceccanti , Aldo Bischi , Marco Antonelli , Andrea Baccioli

Studies have suggested that there is farming potential in residential buildings. However, these studies are limited in scope, require field visits and time-consuming measurements. Furthermore, they have not suggested ways to identify…

Other Computer Science · Computer Science 2021-01-06 Ankit Palliwal , Shuang Song , Hugh Tiang Wah Tan , Filip Biljecki

Machine vision for plant phenotyping is an emerging research area for producing high throughput in agriculture and crop science applications. Since 2D based approaches have their inherent limitations, 3D plant analysis is becoming state of…

Computer Vision and Pattern Recognition · Computer Science 2017-05-02 Ayan Chaudhury , Christopher Ward , Ali Talasaz , Alexander G. Ivanov , Mark Brophy , Bernard Grodzinski , Norman P. A. Huner , Rajni V. Patel , John L. Barron

Accurately counting maize tassels is important for monitoring the growth status of maize plants. This tedious task, however, is still mainly done by manual efforts. In the context of modern plant phenotyping, automating this task is…

Computer Vision and Pattern Recognition · Computer Science 2017-07-11 Hao Lu , Zhiguo Cao , Yang Xiao , Bohan Zhuang , Chunhua Shen

A computational framework integrating optimization algorithms, parallel computing and plant physiology was developed to explore crop ideotype design. The backbone of the framework is a plant physiology model that accurately tracks water use…

Biological Physics · Physics 2017-04-21 Talukder Z. Jubery , Baskar Ganapathysubramanian , Matthew E. Gilbert , Daniel Attinger

Mapping field environments into point clouds using a 3D LIDAR has the ability to become a new approach for online estimation of crop biomass in the field. The estimation of crop biomass in agriculture is expected to be closely correlated to…

New imaging techniques are in great demand for investigating underground plant roots systems which play an important role in crop production. Compared with other non-destructive imaging modalities, PET can image plant roots in natural soil…

Quantitative Methods · Quantitative Biology 2015-01-05 Qiang Wang , Sergey Komarov , Aswin J. Mathews , Ke Li , Christopher Topp , Joseph A. O'Sullivan , Yuan-Chuan Tai

Thin leaves, fine stems, self-occlusion, non-rigid and slowly changing structures make plants difficult for three-dimensional (3D) scanning and reconstruction -- two critical steps in automated visual phenotyping. Many current solutions…

Computer Vision and Pattern Recognition · Computer Science 2017-02-28 Chuong V Nguyen , Jurgen Fripp , David R Lovell , Robert Furbank , Peter Kuffner , Helen Daily , Xavier Sirault

The development of artificial intelligence (AI) and machine learning (ML) based tools for 3D phenotyping, especially for maize, has been limited due to the lack of large and diverse 3D datasets. 2D image datasets fail to capture essential…

Computer Vision and Pattern Recognition · Computer Science 2025-07-04 Elvis Kimara , Mozhgan Hadadi , Jackson Godbersen , Aditya Balu , Talukder Jubery , Yawei Li , Adarsh Krishnamurthy , Patrick S. Schnable , Baskar Ganapathysubramanian

Early-stage plant density is an essential trait that determines the fate of a genotype under given environmental conditions and management practices. The use of RGB images taken from UAVs may replace traditional visual counting in fields…

Computer Vision and Pattern Recognition · Computer Science 2021-09-07 Kaaviya Velumani , Raul Lopez-Lozano , Simon Madec , Wei Guo , Joss Gillet , Alexis Comar , Frederic Baret

Accurate reconstruction of plant phenotypes plays a key role in optimising sustainable farming practices in the field of Precision Agriculture (PA). Currently, optical sensor-based approaches dominate the field, but the need for…

Computer Vision and Pattern Recognition · Computer Science 2024-03-29 Kewei Hu , Ying Wei , Yaoqiang Pan , Hanwen Kang , Chao Chen

Accurate reconstruction of leaf surfaces from 3D point cloud is essential for agricultural applications such as phenotyping. However, real-world plant data (i.e., irregular 3D point cloud) are often complex to reconstruct plant parts…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Arif Ahmed , Parikshit Maini

This study introduces a robust framework for generating procedural 3D models of maize (Zea mays) plants from LiDAR point cloud data, offering a scalable alternative to traditional field-based phenotyping. Our framework leverages Non-Uniform…

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