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Single-cell technologies generate high-dimensional point clouds of cells, enabling detailed characterization of complex patient states and treatment responses. Yet each patient is represented by an irregular point cloud rather than a simple…
Extracting specific items from 10-K reports is challenging due to variations in document formats and item presentation. To improve over traditional rule-based approaches, this study introduces and compares two advanced item segmentation…
Domain specific large language models are increasingly used to support patient education, triage, and clinical decision making in ophthalmology, making rigorous evaluation essential to ensure safety and accuracy. This study evaluated four…
In the rapidly evolving field of financial sentiment analysis, the efficiency and accuracy of predictive models are critical due to their significant impact on financial markets. Transformer based models like BERT and large language models…
Objective: This study quantifies the capabilities of GPT-3.5 and GPT-4 for clinical named entity recognition (NER) tasks and proposes task-specific prompts to improve their performance. Materials and Methods: We evaluated these models on…
Big data analytics is one of the state-of-the-art tools to optimize networks and transform them from merely being a blind tube that conveys data, into a cognitive, conscious, and self-optimizing entity that can intelligently adapt according…
Topic modeling is frequently being used for analysing large text corpora such as news articles or social media data. BERTopic, consisting of sentence embedding, dimension reduction, clustering, and topic extraction, is the newest and…
Identification of key variables such as medications, diseases, relations from health records and clinical notes has a wide range of applications in the clinical domain. n2c2 2022 provided shared tasks on challenges in natural language…
Passively collected behavioral health data from ubiquitous sensors holds significant promise to provide mental health professionals insights from patient's daily lives; however, developing analysis tools to use this data in clinical…
Interpreting and communicating electrocardiogram (ECG) findings are crucial yet challenging tasks in cardiovascular diagnosis, traditionally requiring significant expertise and precise clinical communication. This paper introduces…
This paper proposes a medical literature summary generation method based on the BERT model to address the challenges brought by the current explosion of medical information. By fine-tuning and optimizing the BERT model, we develop an…
Medical triage is the task of allocating medical resources and prioritizing patients based on medical need. This paper introduces the first large-scale public dataset for studying medical triage in the context of asynchronous outpatient…
We introduce OTTER, a unified open-set multi-label tagging framework that harmonizes the stability of a curated, predefined category set with the adaptability of user-driven open tags. OTTER is built upon a large-scale, hierarchically…
We describe team ielab from CSIRO and The University of Queensland's approach to the 2023 TREC Clinical Trials Track. Our approach was to use neural rankers but to utilise Large Language Models to overcome the issue of lack of training data…
Traditional computer vision models are trained to predict a fixed set of predefined categories. Recently, natural language has been shown to be a broader and richer source of supervision that provides finer descriptions to visual concepts…
MITRE ATT&CK is a cybersecurity knowledge base that organizes threat actor and cyber-attack information into a set of tactics describing the reasons and goals threat actors have for carrying out attacks, with each tactic having a set of…
Health Mention Classification (HMC) plays a critical role in leveraging social media posts for real-time tracking and public health monitoring. Nevertheless, the process of HMC presents significant challenges due to its intricate nature,…
Automatic Speech Recognition (ASR) in medical contexts has the potential to save time, cut costs, increase report accuracy, and reduce physician burnout. However, the healthcare industry has been slower to adopt this technology, in part due…
Mass casualty incidents (MCIs) pose a significant challenge to emergency medical services by overwhelming available resources and personnel. Effective victim assessment is the key to minimizing casualties during such a crisis. We introduce…
This paper proposes a knowledge-enhanced disease diagnosis method based on a prompt learning framework. The method retrieves structured knowledge from external knowledge graphs related to clinical cases, encodes it, and injects it into the…