English
Related papers

Related papers: Compare Similarities Between DNA Sequences Using P…

200 papers

Molecular biology explains function of molecules by their geometrical and electronical structures that are mainly determined by utilization of quantum effects in chemistry. However, further quantum effects are not thought to play any…

Quantum Physics · Physics 2011-12-30 Onur Pusuluk , Cemsinan Deliduman

Quantum kernels are reproducing kernel functions built using quantum-mechanical principles and are studied with the aim of outperforming their classical counterparts. The enthusiasm for quantum kernel machines has been tempered by recent…

Quantum Physics · Physics 2025-06-05 Hachem Kadri , Joachim Tomasi , Yuka Hashimoto , Sandrine Anthoine

Kernel methods are ubiquitous in classical machine learning, and recently their formal similarity with quantum mechanics has been established. To grasp the potential advantage of quantum machine learning, it is necessary to understand the…

Quantum Physics · Physics 2021-11-17 Roohollah Ghobadi

The task of testing whether two uncharacterized quantum devices behave in the same way is crucial for benchmarking near-term quantum computers and quantum simulators, but has so far remained open for continuous-variable quantum systems. In…

Quantum Physics · Physics 2023-05-29 Ya-Dong Wu , Yan Zhu , Ge Bai , Yuexuan Wang , Giulio Chiribella

We introduce the first learning-based dense matching algorithm, termed Equirectangular Projection-Oriented Dense Kernelized Feature Matching (EDM), specifically designed for omnidirectional images. Equirectangular projection (ERP) images,…

Computer Vision and Pattern Recognition · Computer Science 2025-03-03 Dongki Jung , Jaehoon Choi , Yonghan Lee , Somi Jeong , Taejae Lee , Dinesh Manocha , Suyong Yeon

The Exact Circular Pattern Matching (ECPM) problem consists of reporting every occurrence of a rotation of a pattern $P$ in a text $T$. In many real-world applications, specifically in computational biology, circular rotations are of…

Data Structures and Algorithms · Computer Science 2022-04-21 Will Solow , Matthew Barich , Brendan Mumey

Machine learning and quantum computing are two technologies that are causing a paradigm shift in the performance and behavior of certain algorithms, achieving previously unattainable results. Machine learning (kernel classification) has…

Quantum Physics · Physics 2020-04-28 Siddharth Sharma

Geometric deep learning refers to the scenario in which the symmetries of a dataset are used to constrain the parameter space of a neural network and thus, improve their trainability and generalization. Recently this idea has been…

Quantum Physics · Physics 2024-11-19 Sreetama Das , Stefano Martina , Filippo Caruso

In recent years, research on near-term quantum machine learning has explored how classical machine learning algorithms endowed with access to quantum kernels (similarity measures) can outperform their purely classical counterparts. Although…

Quantum Physics · Physics 2022-06-24 Zoran Krunic , Frederik F. Flöther , George Seegan , Nathan Earnest-Noble , Omar Shehab

Quantum synchronisation errors are a class of quantum errors that change the number of qubits in a quantum system. The classical error correction of synchronisation errors has been well-studied, including an insertion-deletion equivalence…

Quantum Physics · Physics 2026-02-10 Lewis Bulled , Yingkai Ouyang

Storing information in DNA molecules is of great interest because of its advantages in longevity, high storage density, and low maintenance cost. A key step in the DNA storage pipeline is to efficiently cluster the retrieved DNA sequences…

Machine Learning · Computer Science 2022-07-12 Alan J. X. Guo , Cong Liang , Qing-Hu Hou

Sequence Alignment is the process of aligning biological sequences in order to identify similarities between multiple sequences. In this paper, a Quantum Algorithm for finding the optimal alignment between DNA sequences has been…

Data Structures and Algorithms · Computer Science 2025-09-05 Md. Rabiul Islam Khan , Shadman Shahriar , Shaikh Farhan Rafid

We propose digital-analog quantum kernels for enhancing the detection of complex features in the classification of images. We consider multipartite-entangled analog blocks, stemming from native Ising interactions in neutral-atom quantum…

DNA sequencing is the physical/biochemical process of identifying the location of the four bases (Adenine, Guanine, Cytosine, Thymine) in a DNA strand. As semiconductor technology revolutionized computing, modern DNA sequencing technology…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-06 S. Karen Khatamifard , Zamshed Chowdhury , Nakul Pande , Meisam Razaviyayn , Chris Kim , Ulya R. Karpuzcu

We present a comprehensive study of the commute time kernel method via the effective resistance framework analyzing the quantum complexity of the originally classical approach. Our study reveals that while there is a trade-off between…

Quantum Physics · Physics 2026-01-06 Adam Wesołowski , Karim Essafi

For strings of letters from a small alphabet, such as DNA sequences, we present a quantum encoding that empirically provides a strong correlation between the Levenshtein edit distance and the fidelity between quantum states defined by the…

Quantum Physics · Physics 2026-04-02 Danylo Yakymenko , Maksym Chernyshev , Illia Savchenko , Sergii Strelchuk

We develop a novel method for measuring the similarity between complete weighted graphs, which are probed by means of discrete-time quantum walks. Directly probing complete graphs using discrete-time quantum walks is intractable due to the…

Data Structures and Algorithms · Computer Science 2019-05-01 Lu Bai , Luca Rossi , Lixin Cui , Jian Cheng , Edwin R. Hancock

Quantum computing promises to speed up some of the most challenging problems in science and engineering. Quantum algorithms have been proposed showing theoretical advantages in applications ranging from chemistry to logistics optimization.…

Quantum Physics · Physics 2021-11-12 Niklas Heim , Atiyo Ghosh , Oleksandr Kyriienko , Vincent E. Elfving

The development of quantum computers has been the stimulus that enables the realization of Quantum Machine Learning (QML), an area that integrates the calculational framework of quantum mechanics with the adaptive properties of classical…

Computational Engineering, Finance, and Science · Computer Science 2025-09-04 Bhavna Bose , Saurav Verma

Recent feature matching methods have achieved remarkable performance but lack efficiency consideration. In this paper, we revisit the mainstream detector-free matching pipeline and improve all its stages considering both accuracy and…

Computer Vision and Pattern Recognition · Computer Science 2025-12-11 Xi Li , Tong Rao , Cihui Pan