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We establish basic properties of cluster algebras associated with oriented bordered surfaces with marked points. In particular, we show that the underlying cluster complex of such a cluster algebra does not depend on the choice of…

Rings and Algebras · Mathematics 2010-03-15 Sergey Fomin , Michael Shapiro , Dylan Thurston

Systems as diverse as genetic networks or the world wide web are best described as networks with complex topology. A common property of many large networks is that the vertex connectivities follow a scale-free power-law distribution. This…

Disordered Systems and Neural Networks · Physics 2015-06-25 Albert-Laszlo Barabasi , Reka Albert

Compound graphs are networks in which vertices can be grouped into larger subsets, with these subsets capable of further grouping, resulting in a nesting that can be many levels deep. In several applications, including biological workflows,…

Human-Computer Interaction · Computer Science 2024-08-09 Chang Han , Justin Lieffers , Clayton Morrison , Katherine E. Isaacs

A growing family of random graphs is called robust if it retains a giant component after percolation with arbitrary positive retention probability. We study robustness for graphs, in which new vertices are given a spatial position on the…

Probability · Mathematics 2015-04-08 Emmanuel Jacob , Peter Morters

Networks with underlying metric spaces attract increasing research attention in network science, statistical physics, applied mathematics, computer science, sociology, and other fields. This attention is further amplified by the current…

Physics and Society · Physics 2020-04-22 Marian Boguna , Dmitri Krioukov , Pedro Almagro , M. Angeles Serrano

Multilevel self-assembly involving small structured groups of nano-particles provides new routes to development of functional materials with a sophisticated architecture. Apart from the inter-particle forces, the geometrical shapes and…

Physics and Society · Physics 2017-11-15 Milovan Suvakov , Miroslav Andjelkovic , Bosiljka Tadic

This paper proposes a simple but effective graph-based agglomerative algorithm, for clustering high-dimensional data. We explore the different roles of two fundamental concepts in graph theory, indegree and outdegree, in the context of…

Computer Vision and Pattern Recognition · Computer Science 2015-03-20 Wei Zhang , Xiaogang Wang , Deli Zhao , Xiaoou Tang

Computation of persistent homology of simplicial representations such as the Rips and the C\v{e}ch complexes do not efficiently scale to large point clouds. It is, therefore, meaningful to devise approximate representations and evaluate the…

Computational Geometry · Computer Science 2020-09-29 Naheed Anjum Arafat , Debabrota Basu , Stéphane Bressan

Complex networks are characterized by latent geometries induced by their topology or by the dynamics on the top of them. In the latter case, different network-driven processes induce distinct geometric features that can be captured by…

Physics and Society · Physics 2021-04-07 Giulia Bertagnolli , Manlio De Domenico

A general scheme for detecting and analyzing topological patterns in large complex networks is presented. In this scheme the network in question is compared with its properly randomized version that preserves some of its low-level…

Statistical Mechanics · Physics 2008-03-25 Sergei Maslov , Kim Sneppen , Alexei Zaliznyak

We consider a random geometric graph with vertices sampled from a probability measure supported on $\mathbb R^d$, and study its connectivity. We show the graph is typically disconnected, unless the sampling density has superexponential…

Probability · Mathematics 2021-04-07 Henry-Louis de Kergorlay

Network-valued data are encountered in a wide range of applications and pose challenges in learning due to their complex structure and absence of vertex correspondence. Typical examples of such problems include classification or grouping of…

Machine Learning · Computer Science 2021-11-09 Mahalakshmi Sabanayagam , Leena Chennuru Vankadara , Debarghya Ghoshdastidar

We show that real multiplex networks are unexpectedly robust against targeted attacks on high degree nodes, and that hidden interlayer geometric correlations predict this robustness. Without geometric correlations, multiplexes exhibit an…

We generalize finite-sample bounds for convex clustering to the setting where affinity weights appearing in the objective correspond to a general connected graph. These bounds and their analysis lead to a better understanding of clustering…

Machine Learning · Statistics 2026-05-26 Sam Rosen , Jason Xu

Deep neural networks have been demonstrated to achieve phenomenal success in many domains, and yet their inner mechanisms are not well understood. In this paper, we investigate the curvature of image manifolds, i.e., the manifold deviation…

Machine Learning · Computer Science 2023-11-17 Ilya Kaufman , Omri Azencot

Geometric constraints impact the formation of a broad range of spatial networks, from amino acid chains folding to proteins structures to rearranging particle aggregates. How the network of interactions dynamically self-organizes in such…

Molecular Networks · Quantitative Biology 2016-10-19 Nora Molkenthin , Marc Timme

In Network Science node neighbourhoods, also called ego-centered networks have attracted large attention. In particular the clustering coefficient has been extensively used to measure their local cohesiveness. In this paper, we show how,…

Physics and Society · Physics 2019-08-22 Alexander P. Kartun-Giles , Ginestra Bianconi

The structure of many complex networks includes edge directionality and weights on top of their topology. Network analysis that can seamlessly consider combination of these properties are desirable. In this paper, we study two important…

Social and Information Networks · Computer Science 2021-11-24 Frederique Oggier , Silivanxay Phetsouvanh , Anwitaman Datta

The behaviour and functioning of a variety of complex physical and biological systems depend on the spatial organisation of their constituent units, and on the presence and formation of clusters of functionally similar or related…

Physics and Society · Physics 2023-08-16 Silvia Rognone , Vincenzo Nicosia

Topological landscape is introduced for networks with functions defined on the nodes. By extending the notion of gradient flows to the network setting, critical nodes of different indices are defined. This leads to a concise and…

Methodology · Statistics 2012-05-01 E. Weinan , Jianfeng Lu , Yuan Yao
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