English
Related papers

Related papers: Can Large Language Models Predict Antimicrobial Re…

200 papers

This study investigates the potential for Large Language Models (LLMs) to scale-up Dynamic Assessment (DA). To facilitate such an investigation, we first developed DynaWrite-a modular, microservices-based grammatical tutoring application…

Computation and Language · Computer Science 2025-09-08 Timur Jaganov , John Blake , Julián Villegas , Nicholas Carr

Large language models (LLMs) have emerged as powerful tools for medical information retrieval, yet their accuracy and depth remain limited in specialized domains such as Alzheimer's disease (AD), a growing global health challenge. To…

A latent-variable model is introduced for text matching, inferring sentence representations by jointly optimizing generative and discriminative objectives. To alleviate typical optimization challenges in latent-variable models for text, we…

Computation and Language · Computer Science 2017-11-23 Dinghan Shen , Yizhe Zhang , Ricardo Henao , Qinliang Su , Lawrence Carin

Associative learning--forming links between co-occurring items--is fundamental to human cognition, reshaping internal representations in complex ways. Testing hypotheses on how representational changes occur in biological systems is…

Machine Learning · Computer Science 2025-10-27 Camila Kolling , Vy Ai Vo , Mariya Toneva

The discovery of new energetic materials remains a pressing challenge hindered by limited availability of high-quality data. To address this, we have developed generative molecular language models that have been pretrained on extensive…

We propose generative neural network methods to generate DNA sequences and tune them to have desired properties. We present three approaches: creating synthetic DNA sequences using a generative adversarial network; a DNA-based variant of…

Machine Learning · Computer Science 2017-12-19 Nathan Killoran , Leo J. Lee , Andrew Delong , David Duvenaud , Brendan J. Frey

Automated planning is concerned with developing efficient algorithms to generate plans or sequences of actions to achieve a specific goal in a given environment. Emerging Large Language Models (LLMs) can answer questions, write high-quality…

We introduce a novel data generation method for contradiction detection, which leverages the generative power of large language models as well as linguistic rules. Our vision is to provide a condensed corpus of prototypical contradictions,…

Computation and Language · Computer Science 2023-10-24 Maren Pielka , Svetlana Schmidt , Rafet Sifa

Large Language Models (LLMs) have become ubiquitous across various domains, transforming the way we interact with information and conduct research. However, most high-performing LLMs remain confined behind proprietary walls, hindering…

The capabilities of large language models (LLMs) are widely regarded as relying on autoregressive models (ARMs). We challenge this notion by introducing LLaDA, a diffusion model trained from scratch under the pre-training and supervised…

Computation and Language · Computer Science 2025-10-21 Shen Nie , Fengqi Zhu , Zebin You , Xiaolu Zhang , Jingyang Ou , Jun Hu , Jun Zhou , Yankai Lin , Ji-Rong Wen , Chongxuan Li

The deployment of autonomous robots in various domains has raised significant concerns about their trustworthiness and accountability. This study explores the potential of Large Language Models (LLMs) in analyzing ROS 2 logs generated by…

General purpose Large Language Models (LLM) such as the Generative Pretrained Transformer (GPT) and Large Language Model Meta AI (LLaMA) have attracted much attention in recent years. There is strong evidence that these models can perform…

Computation and Language · Computer Science 2024-04-25 Hossein Salami , Brandye Smith-Goettler , Vijay Yadav

Scaling test-time compute via parallel sampling can substantially improve LLM reasoning, but is often limited by Best-of-N selection quality. Generative selection methods, such as GenSelect, address this bottleneck, yet strong selection…

The introduction of transformer architecture was a turning point in Natural Language Processing (NLP). Models based on the transformer architecture such as Bidirectional Encoder Representations from Transformers (BERT) and Generative…

Large-language models are capable of completing a variety of tasks, but remain unpredictable and intractable. Representation engineering seeks to resolve this problem through a new approach utilizing samples of contrasting inputs to detect…

Artificial Intelligence · Computer Science 2025-02-26 Lukasz Bartoszcze , Sarthak Munshi , Bryan Sukidi , Jennifer Yen , Zejia Yang , David Williams-King , Linh Le , Kosi Asuzu , Carsten Maple

We consider the problem of training generative models with deep neural networks as generators, i.e. to map latent codes to data points. Whereas the dominant paradigm combines simple priors over codes with complex deterministic models, we…

Machine Learning · Computer Science 2018-01-09 Yannic Kilcher , Aurelien Lucchi , Thomas Hofmann

Recent advances in semi-supervised learning with deep generative models have shown promise in generalizing from small labeled datasets ($\mathbf{x},\mathbf{y}$) to large unlabeled ones ($\mathbf{x}$). In the case where the codomain has…

Machine Learning · Computer Science 2017-08-25 Ian Gemp , Ishan Durugkar , Mario Parente , M. Darby Dyar , Sridhar Mahadevan

Can we leverage LLMs to model the process of discovering novel language model (LM) architectures? Inspired by real research, we propose a multi-agent LLM approach that simulates the conventional stages of research, from ideation and…

Artificial Intelligence · Computer Science 2025-06-26 Junyan Cheng , Peter Clark , Kyle Richardson

The exponential growth of online textual content across diverse domains has necessitated advanced methods for automated text classification. Large Language Models (LLMs) based on transformer architectures have shown significant success in…

Computation and Language · Computer Science 2025-09-09 Zhyar Rzgar K Rostam , Gábor Kertész

Understanding cell identity and function through single-cell level sequencing data remains a key challenge in computational biology. We present a novel framework that leverages gene-specific textual annotations from the NCBI Gene database…

Genomics · Quantitative Biology 2025-05-14 Douglas Jiang , Zilin Dai , Luxuan Zhang , Qiyi Yu , Haoqi Sun , Feng Tian