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Related papers: A model for boundary-driven tissue morphogenesis

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The characteristic ``in-plane" bending associated with soft robots' deformation make them preferred over rigid robots in sophisticated manipulation and movement tasks. Executing such motion strategies to precision in soft deformable robots…

Robotics · Computer Science 2023-12-12 Lekan Molu , Shaoru Chen , Audrey Sedal

We demonstrate that absorbing phase transitions in one dimension may be induced by the dynamics of a single site. As an example we consider a one-dimensional model of diffusing particles, where a single site at the boundary evolves…

Statistical Mechanics · Physics 2008-04-23 A. C. Barato , H. Hinrichsen

Scroll-wave instabilities in excitable domains are central to life-threatening arrhythmias, yet practical methods to stabilize these dynamics remain limited. Here, we investigate the effects of boundary layer heterogeneities in the…

Biological Physics · Physics 2025-12-02 Sebastian Echeverria-Alar , Wouter-Jan Rappel

In the present paper, an asymptotic model is constructed for the short-time deformation of an articular cartilage layer modeled as transversely isotropic, transversely homogeneous (TITH) biphasic material. It is assumed that the layer…

Tissues and Organs · Quantitative Biology 2015-12-01 Gennaro Vitucci , Ivan Argatov , Gennady Mishuris

We develop a description of diffusion limited growth in solid-solid transformations, which are strongly influenced by elastic effects. Density differences and structural transformations provoke stresses at interfaces, which affect the phase…

Materials Science · Physics 2008-11-18 M. Fleck , C. Hueter , D. Pilipenko , R. Spatschek , E. A. Brener

Abridged abstract: Inert interactions between randomly moving entities and spatial disorder play a crucial role in quantifying the diffusive properties of a system. These interactions affect only the movement of the entities, and examples…

Statistical Mechanics · Physics 2022-09-20 Seeralan Sarvaharman , Luca Giuggioli

This work reports an extensive study of three-dimensional topological ordered phases that, in one of the directions behave like usual topological order concerning mobility of excitations, but in the perpendicular plane manifest type-II…

Strongly Correlated Electrons · Physics 2024-12-12 Heitor Casasola , Guilherme Delfino , Yizhi You , Paula F. Bienzobaz , Pedro R. S. Gomes

Growth pattern dynamics lie at the heart of morphogenesis. Here, we investigate the growth of plant leaves. We compute the conformal transformation that maps the contour of a leaf at a given stage onto the contour of the same leaf at a…

Tissues and Organs · Quantitative Biology 2016-11-23 Karen Alim , Shahaf Armon , Boris I. Shraiman , Arezki Boudaoud

Morphogenesis is a tightly regulated process that has been studied for decades. We are developing data-based and image-basd mechanistic models for a range of developmental processes with a view to integrate the available knowledge and to…

Quantitative Methods · Quantitative Biology 2013-09-10 Denis Menshykau , Srivathsan Adivarahan , Philipp Germann , Lisa Lermuzeaux , Dagmar Iber

One of the major challenges in biology concerns the integration of data across length and time scales into a consistent framework: how do macroscopic properties and functionalities arise from the molecular regulatory networks - and how can…

Computational Engineering, Finance, and Science · Computer Science 2015-10-20 Dagmar Iber , Zahra Karimaddini , Erkan Ünal

Phagocytosis and receptor-mediated endocytosis are vitally important particle uptake mechanisms in many cell types, ranging from single-cell organisms to immune cells. In both processes, engulfment by the cell depends critically on both…

Cell Behavior · Quantitative Biology 2016-06-02 David M. Richards , Robert G. Endres

The generation of anisotropic shapes occurs during morphogenesis of almost all organisms. With the recent renewal of the interest in mechanical aspects of morphogenesis, it has become clear that mechanics contributes to anisotropic forms in…

Cell Behavior · Quantitative Biology 2018-04-19 Jean-Daniel Julien , Arezki Boudaoud

Tissues are subjected to large external forces and undergo global deformations during morphogenesis. We use synthetic analogues of tissues to study the impact of cell-cell adhesion on the response of cohesive cellular assemblies under such…

Morphogenesis involves the dynamic interplay of biochemical, mechanical and electrical processes. Here we ask: to what extent can the course of morphogenesis be modulated and controlled by an external electric field? We show that above a…

Biological Physics · Physics 2020-01-08 Erez Braun , Hillel Ori

In proliferating epithelia of mammalian skin, cells of irregular polygonal-like shapes pack into complex nearly flat two-dimensional structures that are pliable to deformations. In this work, we employ various sensitive correlation…

Statistical Mechanics · Physics 2016-12-07 Duyu Chen , Wen Yih Aw , Danelle Devenport , Salvatore Torquato

Interaction between active materials and the boundaries of geometrical confinement is key to many emergent phenomena in active systems. For living active matter consisting of animal cells or motile bacteria, the confinement boundary is…

Soft Condensed Matter · Physics 2022-08-29 Haoran Xu , Mehrana R. Nejad , Julia M. Yeomans , Yilin Wu

We consider aspects of the population dynamics, inside a bound domain, of diffusing agents carrying an attribute which is stochastically destroyed upon contact with the boundary. The normal mode analysis of the relevant Helmholtz equation…

Soft Condensed Matter · Physics 2015-05-13 Seungoh Ryu

Deformable object manipulation presents a unique set of challenges in robotic manipulation by exhibiting high degrees of freedom and severe self-occlusion. State representation for materials that exhibit plastic behavior, like modeling clay…

Robotics · Computer Science 2023-09-19 Alison Bartsch , Charlotte Avra , Amir Barati Farimani

Self-propulsion and navigation due to the sensing of environmental conditions - such as durotaxis and chemotaxis - are remarkable properties of biological cells that cannot be reproduced by single-component self-propelled particles. We…

Soft Condensed Matter · Physics 2024-06-03 Clara Abaurrea-Velasco , Thorsten Auth , Gerhard Gompper

Amorphous materials of homogeneous structures usually suffer from nonuniform deformation under shear, which can develop into shear localization and eventually destructive shear band. One approach to tackle this issue is to introduce an…

Materials Science · Physics 2019-02-01 Guo-Jie J. Gao , Yun-Jiang Wang , Shigenobu Ogata