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1. Climate change is altering plant phenology globally with potential deleterious impacts on animal species and entire ecosystems, yet the long-term effects of climate change on tropical leaf production remain poorly understood. 2. We…

Quantitative Methods · Quantitative Biology 2026-04-01 Laura Lüthy , Colin A. Chapman , Patrick Lauer , Patrick Omeja , Urs Kalbitzer

Exploratory data analysis is crucial for developing and understanding classification models from high-dimensional datasets. We explore the utility of a new unsupervised tree ensemble called uncharted forest for visualizing class…

Machine Learning · Statistics 2018-07-03 Casey Kneale , Steven D. Brown

The reconstruction of a central tendency `species tree' from a large number of conflicting gene trees is a central problem in systematic biology. Moreover, it becomes particularly problematic when taxon coverage is patchy, so that not all…

Populations and Evolution · Quantitative Biology 2014-05-27 Mike Steel , Joel D. Velasco

Forest carbon offsets are increasingly popular and can play a significant role in financing climate mitigation, forest conservation, and reforestation. Measuring how much carbon is stored in forests is, however, still largely done via…

Computer Vision and Pattern Recognition · Computer Science 2021-08-20 Gyri Reiersen , David Dao , Björn Lütjens , Konstantin Klemmer , Xiaoxiang Zhu , Ce Zhang

Protecting and restoring forest ecosystems is critical for biodiversity conservation and carbon sequestration. Forest monitoring on a global scale is essential for prioritizing and assessing conservation efforts. Satellite-based remote…

Computer Vision and Pattern Recognition · Computer Science 2024-06-28 Luis Miguel Pazos-Outón , Cristina Nader Vasconcelos , Anton Raichuk , Anurag Arnab , Dan Morris , Maxim Neumann

Random Forest is an ensemble of decision trees based on the bagging and random subspace concepts. As suggested by Breiman, the strength of unstable learners and the diversity among them are the ensemble models' core strength. In this paper,…

Machine Learning · Computer Science 2022-08-11 M. A. Ganaie , M. Tanveer , P. N. Suganthan , V. Snasel

Identifying terrain within satellite image data is a key issue in geographical information sciences, with numerous environmental and safety implications. Many techniques exist to derive classifications from spectral data captured by…

Computer Vision and Pattern Recognition · Computer Science 2024-09-02 David R. Treadwell , Derek Jacoby , Will Parkinson , Bruce Maxwell , Yvonne Coady

Random forest (RF) stands out as a highly favored machine learning approach for classification problems. The effectiveness of RF hinges on two key factors: the accuracy of individual trees and the diversity among them. In this study, we…

Machine Learning · Computer Science 2024-10-28 Ye-eun Kim , Seoung Yun Kim , Hyunjoong Kim

The mapping of plant biodiversity represents a fundamental stage in establishing conservation priorities, particularly in identifying groups of species that share ecological requirements or evolutionary histories. This is often achieved by…

Populations and Evolution · Quantitative Biology 2025-07-09 Maxime Lenormand , Jean-Baptiste Féret , Guillaume Papuga , Samuel Alleaume , Sandra Luque

We introduce a cluster evaluation technique called Tree Index. Our Tree Index algorithm aims at describing the structural information of the clustering rather than the quantitative format of cluster-quality indexes (where the representation…

Machine Learning · Computer Science 2020-03-25 A. H. Beg , Md Zahidul Islam , Vladimir Estivill-Castro

Forest ecosystems are vital to the global carbon cycle, yet their long-term aboveground carbon (AGC) dynamics remain uncertain. Here, we integrate multi-source satellite observations with probabilistic deep learning models to reconstruct a…

In surveys, the interest lies in estimating finite population parameters such as population totals and means. In most surveys, some auxiliary information is available at the estimation stage. This information may be incorporated in the…

Methodology · Statistics 2022-08-23 Mehdi Dagdoug , Camelia Goga , David Haziza

Fixed effects models are very flexible because they do not make assumptions on the distribution of effects and can also be used if the heterogeneity component is correlated with explanatory variables. A disadvantage is the large number of…

Methodology · Statistics 2015-12-17 Moritz Berger , Gerhard Tutz

Plant biomass estimation is critical due to the variability of different environmental factors and crop management practices associated with it. The assessment is largely impacted by the accurate prediction of different environmental…

Artificial Intelligence · Computer Science 2023-02-07 Syeda Nyma Ferdous , Xin Li , Kamalakanta Sahoo , Richard Bergman

Tree perception is an essential building block toward autonomous forestry operations. Current developments generally consider input data from lidar sensors to solve forest navigation, tree detection and diameter estimation problems. Whereas…

Computer Vision and Pattern Recognition · Computer Science 2022-11-01 Vincent Grondin , Jean-Michel Fortin , François Pomerleau , Philippe Giguère

Proximally-sensed laser scanning offers significant potential for automated forest data capture, but challenges remain in automatically identifying tree species without additional ground data. Deep learning (DL) shows promise for…

The spatial arrangement of trees in a tropical forest reflects the interplay between aggregating processes, like dispersal limitation, and negative feedback that induces effective repulsion among individuals. Monitoring the variance-mean…

Populations and Evolution · Quantitative Biology 2014-11-11 Efrat Seri , Nadav M. Shnerb

A cyclically dominating three-species ecosystem, modeled within the framework of rock-paper-scissor game, is studied in presence of natural death and an effect of the environment. The environmental impact is parameterized along with the…

Statistical Mechanics · Physics 2024-03-11 Sirshendu Bhattacharyya

Ecological selection is a major driver of community assembly. Selection is classified as stabilizing when species with intermediate trait values gain the highest reproductive success, whereas selection is considered directional when fitness…

Populations and Evolution · Quantitative Biology 2021-05-13 DeMalach Niv , Po-Ju Ke , Tadashi Fukami

In prediction tasks with multi-class outcomes, identifying covariates specifically associated with one or more outcome classes can be important. Conventional variable importance measures (VIMs) from random forests (RFs), like permutation…

Machine Learning · Statistics 2024-09-16 Roman Hornung , Alexander Hapfelmeier
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