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Foundation models (FMs) are driving a prominent shift in biomedical imaging from task-specific models to unified backbone models for diverse tasks. This opens an avenue to integrate imaging, pathology, clinical records, and genomics data…

Quantitative Methods · Quantitative Biology 2026-04-23 Amgad Muneer , Kai Zhang , Ibraheem Hamdi , Rizwan Qureshi , Muhammad Waqas , Shereen Fouad , Hazrat Ali , Syed Muhammad Anwar , Jia Wu

Energy-Based Models (EBMs) have proven to be a highly effective approach for modelling densities on finite-dimensional spaces. Their ability to incorporate domain-specific choices and constraints into the structure of the model through…

Machine Learning · Computer Science 2023-02-24 Jen Ning Lim , Sebastian Vollmer , Lorenz Wolf , Andrew Duncan

Accurate cancer survival prediction requires integration of diverse data modalities that reflect the complex interplay between imaging, clinical parameters, and textual reports. However, existing multimodal approaches suffer from simplistic…

Machine Learning · Computer Science 2025-07-01 Aakash Tripathi , Asim Waqas , Matthew B. Schabath , Yasin Yilmaz , Ghulam Rasool

Training AI models that generalize across tasks and domains has long been among the open problems driving AI research. The emergence of Foundation Models made it easier to obtain expert models for a given task, but the heterogeneity of data…

Machine Learning · Computer Science 2024-05-10 Hongyi Wang , Felipe Maia Polo , Yuekai Sun , Souvik Kundu , Eric Xing , Mikhail Yurochkin

By processing electronic health records (EHRs) as natural language sequences, large language models (LLMs) have shown potential in clinical prediction tasks such as mortality prediction and phenotyping. However, longitudinal or highly…

Computation and Language · Computer Science 2026-05-13 Mingcheng Zhu , Zhiyao Luo , Yu Liu , Tingting Zhu

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Nested Event Extraction (NEE) aims to extract complex event structures where an event contains other events as its arguments recursively. Nested events involve a kind of Pivot Elements (PEs) that simultaneously act as arguments of…

Computation and Language · Computer Science 2024-04-09 Weicheng Ren , Zixuan Li , Xiaolong Jin , Long Bai , Miao Su , Yantao Liu , Saiping Guan , Jiafeng Guo , Xueqi Cheng

The recent surge of foundation models in computer vision and natural language processing opens up perspectives in utilizing multi-modal clinical data to train large models with strong generalizability. Yet pathological image datasets often…

Computer Vision and Pattern Recognition · Computer Science 2023-07-28 Yunkun Zhang , Jin Gao , Mu Zhou , Xiaosong Wang , Yu Qiao , Shaoting Zhang , Dequan Wang

Sparse Mixture-of-Experts (MoE) models can outperform dense large language models at similar computation by activating only a small set of experts per token. However, stacking many expert modules introduces substantial parameter memory,…

Artificial Intelligence · Computer Science 2026-04-03 Xin He , Shunkang Zhang , Kaijie Tang , Shaohuai Shi , Yuxin Wang , Zihao Zeng , Zhenheng Tang , Xiaowen Chu , Haiyan Yin , Ivor W. Tsang , Yew Soon Ong

Deploying deep neural networks (DNNs) on resource-constrained mobile devices presents significant challenges, particularly in achieving real-time performance while simultaneously coping with limited computational resources and battery life.…

Networking and Internet Architecture · Computer Science 2025-09-24 Zekai Sun , Xiuxian Guan , Zheng Lin , Zihan Fang , Xiangming Cai , Zhe Chen , Fangming Liu , Heming Cui , Jie Xiong , Wei Ni , Chau Yuen

Current evaluation frameworks for foundation models rely heavily on static, manually curated benchmarks, limiting their ability to capture the full breadth of model capabilities. This paper introduces Active learning for Capability…

Machine Learning · Computer Science 2025-10-13 Arash Afkanpour , Omkar Dige , Fatemeh Tavakoli , Negin Baghbanzadeh , Farnaz Kohankhaki , Elham Dolatabadi

Recent advances in transformer architectures have revolutionised natural language processing, but their application to healthcare domains presents unique challenges. Patient timelines are characterised by irregular sampling, variable…

Computation and Language · Computer Science 2025-05-26 Linglong Qian , Zina Ibrahim

Foundation models hold significant promise in healthcare, given their capacity to extract meaningful representations independent of downstream tasks. This property has enabled state-of-the-art performance across several clinical…

Emergent intelligence have played a major role in the modern AI development. While existing studies primarily rely on empirical observations to characterize this phenomenon, a rigorous theoretical framework remains underexplored. This study…

Machine Learning · Computer Science 2026-05-13 Jun Shu , Junxiong Jia , Deyu Meng , Zongben Xu

Current inference systems for Mixture-of-Experts (MoE) models primarily employ static parallelization strategies. However, these static approaches cannot consistently achieve optimal performance across different inference scenarios, as they…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-28 Haoran Lin , Xianzhi Yu , Kang Zhao , Han Bao , Zongyuan Zhan , Ting Hu , Wulong Liu , Zekun Yin , Xin Li , Weiguo Liu

With the increasing adoption of AI applications such as large language models and computer vision AI, the computational demands on AI inference systems are continuously rising, making the enhancement of task processing capacity using…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-04 Yubo Wang , Yubo Cui , Tuo Shi , Danyang Li , Wenxin Li , Lide Suo , Tao Wang , Xin Xie

We study the problem of subgroup discovery for survival analysis, where the goal is to find an interpretable subset of the data on which a Cox model is highly accurate. Our work is the first to study this particular subgroup problem, for…

Machine Learning · Computer Science 2026-01-06 Zachary Izzo , Iain Melvin

Graphical User Interface (GUI) task automation constitutes a critical frontier in artificial intelligence research. While effective GUI agents synergistically integrate planning and grounding capabilities, current methodologies exhibit two…

Artificial Intelligence · Computer Science 2025-11-17 Yuan Zhao , Hualei Zhu , Tingyu Jiang , Shen Li , Xiaohang Xu , Hao Henry Wang

Partial Differential Equations (PDEs) are the bedrock for modern computational sciences and engineering, and inherently computationally expensive. While PDE foundation models have shown much promise for simulating such complex…

The embedded topic model (ETM) is a widely used approach that assumes the sampled document-topic distribution conforms to the logistic normal distribution for easier optimization. However, this assumption oversimplifies the real…

Computation and Language · Computer Science 2025-01-03 Wei Shao , Mingyang Liu , Linqi Song
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