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Heterogeneous graphs (HGs) are common in real-world scenarios and often exhibit heterophily. However, most existing studies focus on either heterogeneity or heterophily in isolation, overlooking the prevalence of heterophilic HGs in…

Machine Learning · Computer Science 2025-08-11 Qin Chen , Guojie Song

This paper presents HGEN that pioneers ensemble learning for heterogeneous graphs. We argue that the heterogeneity in node types, nodal features, and local neighborhood topology poses significant challenges for ensemble learning,…

Machine Learning · Computer Science 2026-02-05 Jiajun Shen , Yufei Jin , Yi He , Xingquan Zhu

Graph neural networks (GNNs) have become the preferred models for node classification in graph data due to their robust capabilities in integrating graph structures and attributes. However, these models heavily depend on a substantial…

Machine Learning · Computer Science 2025-05-19 Taiyan Zhang , Renchi Yang , Yurui Lai , Mingyu Yan , Xiaochun Ye , Dongrui Fan

Many real-world data can be represented as heterogeneous graphs with different types of nodes and connections. Heterogeneous graph neural network model aims to embed nodes or subgraphs into low-dimensional vector space for various…

Artificial Intelligence · Computer Science 2024-12-24 Xinjun Cai , Jiaxing Shang , Fei Hao , Dajiang Liu , Linjiang Zheng

Elucidating and accurately predicting the druggability and bioactivities of molecules plays a pivotal role in drug design and discovery and remains an open challenge. Recently, graph neural networks (GNN) have made remarkable advancements…

Machine Learning · Computer Science 2022-08-31 Weimin Zhu , Yi Zhang , DuanCheng Zhao , Jianrong Xu , Ling Wang

Large language models (LLMs) have shown promise in simulating human-like social behaviors. Social graphs provide high-quality supervision signals that encode both local interactions and global network structure, yet they remain…

Social and Information Networks · Computer Science 2026-04-14 Jiarui Ji , Zehua Zhang , Zhewei Wei , Bin Tong , Guan Wang , Bo Zheng

The burgeoning presence of Large Language Models (LLM) is propelling the development of personalized recommender systems. Most existing LLM-based methods fail to sufficiently explore the multi-view graph structure correlations inherent in…

Information Retrieval · Computer Science 2025-07-30 Xu Guo , Tong Zhang , Yuanzhi Wang , Chenxu Wang , Fuyun Wang , Xudong Wang , Xiaoya Zhang , Xin Liu , Zhen Cui

Illegal marketplaces have increasingly shifted to concealed parts of the internet, including the deep and dark web, as well as platforms such as Telegram, Reddit, and Pastebin. These channels enable the anonymous trade of illicit goods…

Graph representation learning, involving both node features and graph structures, is crucial for real-world applications but often encounters pervasive noise. State-of-the-art methods typically address noise by focusing separately on node…

Machine Learning · Computer Science 2024-10-17 Guangxin Su , Yifan Zhu , Wenjie Zhang , Hanchen Wang , Ying Zhang

Large language models (LLMs) have recently shown strong potential in modeling relational structures. However, existing approaches remain fundamentally graph-centric: they focus on processing pairwise graph structures into tokens that LLMs…

Computation and Language · Computer Science 2026-05-22 Mengqi Lei , Guohuan Xie , Shihui Ying , Shaoyi Du , Jun-Hai Yong , Siqi Li , Yue Gao

Vulnerability detection is a critical problem in software security and attracts growing attention both from academia and industry. Traditionally, software security is safeguarded by designated rule-based detectors that heavily rely on…

Software Engineering · Computer Science 2024-06-07 Tiehua Zhang , Rui Xu , Jianping Zhang , Yuze Liu , Xin Chen , Jun Yin , Xi Zheng

With the diversification of online social platforms, news dissemination has become increasingly complex, heterogeneous, and multimodal, making the fake news detection task more challenging and crucial. Previous works mainly focus on…

Multimedia · Computer Science 2025-01-28 Mingxin Li , Yuchen Zhang , Haowei Xu , Xianghua Li , Chao Gao , Zhen Wang

Heterogeneous graph representation learning (HGRL) is essential for modeling complex systems with diverse node and edge types. However, most existing methods are limited to closed-world settings with shared schemas and feature spaces,…

Machine Learning · Computer Science 2026-03-31 Xuanze Chen , Jiajun Zhou , Yadong Li , Shanqing Yu , Qi Xuan

Large language models (LLMs) like ChatGPT, exhibit powerful zero-shot and instruction-following capabilities, have catalyzed a revolutionary transformation across diverse fields, especially for open-ended tasks. While the idea is less…

Artificial Intelligence · Computer Science 2024-02-29 Mengmei Zhang , Mingwei Sun , Peng Wang , Shen Fan , Yanhu Mo , Xiaoxiao Xu , Hong Liu , Cheng Yang , Chuan Shi

Graph-structured data plays a vital role in numerous domains, such as social networks, citation networks, commonsense reasoning graphs and knowledge graphs. While graph neural networks have been employed for graph processing, recent…

Computation and Language · Computer Science 2026-05-19 Wooyoung Kim , Byungyoon Park , Wooju Kim

Under circumstances of heterophily, where nodes with different labels tend to be connected based on semantic meanings, Graph Neural Networks (GNNs) often exhibit suboptimal performance. Current studies on graph heterophily mainly focus on…

Machine Learning · Computer Science 2024-11-13 Yilun Zheng , Jiahao Xu , Lihui Chen

Graph neural networks (GNNs) have become a standard paradigm for graph representation learning, yet their message passing mechanism implicitly assumes that messages can be represented by source node embeddings, an assumption that fails in…

Artificial Intelligence · Computer Science 2026-03-02 Dawei Cheng , Wenjun Wang , Mingjian Guang

Modeling the interactions between drugs, targets, and diseases is paramount in drug discovery and has significant implications for precision medicine and personalized treatments. Current approaches frequently consider drug-target or…

Machine Learning · Computer Science 2023-12-04 Farhan Tanvir , Khaled Mohammed Saifuddin , Tanvir Hossain , Arunkumar Bagavathi , Esra Akbas

Graph Transformers, leveraging the global attention to capture long-range dependencies in graph structures, have significantly advanced graph machine learning, but face prohibitive computational complexity. Tokenized Graph Learning Models…

Machine Learning · Computer Science 2025-05-23 Zhibiao Wang , Yunlong Zhou , Ziwei Zhang , Mengmei Zhang , Shirui Pan , Chunming Hu , Xiao Wang

This work proposes a neural network architecture that learns policies for multiple agent classes in a heterogeneous multi-agent reinforcement setting. The proposed network uses directed labeled graph representations for states, encodes…

Artificial Intelligence · Computer Science 2020-10-22 Douglas De Rizzo Meneghetti , Reinaldo Augusto da Costa Bianchi