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Related papers: Hypergraph Foundation Model

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Recommender systems are pivotal in delivering personalised user experiences across various domains. However, capturing the heterophily patterns and the multi-dimensional nature of user-item interactions poses significant challenges. To…

Information Retrieval · Computer Science 2025-10-03 Darnbi Sakong , Thanh Tam Nguyen

Heterogeneous molecular entities and their interactions, commonly depicted as a network, are crucial for advancing our systems-level understanding of biology. With recent advancements in high-throughput data generation and a significant…

Quantitative Methods · Quantitative Biology 2026-03-18 Kishan KC , Rui Li , Paribesh Regmi , Anne R. Haake

Hypergraphs provide a natural representation for many real world datasets. We propose a novel framework, HNHN, for hypergraph representation learning. HNHN is a hypergraph convolution network with nonlinear activation functions applied to…

Machine Learning · Computer Science 2020-07-15 Yihe Dong , Will Sawin , Yoshua Bengio

Graph foundation models (GFM) aim to acquire transferable knowledge by pre-training on diverse graphs, which can be adapted to various downstream tasks. However, domain shift in graphs is inherently two-dimensional: graphs differ not only…

Computation and Language · Computer Science 2026-03-12 Xingtong Yu , Shenghua Ye , Ruijuan Liang , Chang Zhou , Hong Cheng , Xinming Zhang , Yuan Fang

Probabilistic graphical models provide a powerful tool to describe complex statistical structure, with many real-world applications in science and engineering from controlling robotic arms to understanding neuronal computations. A major…

Artificial Intelligence · Computer Science 2023-05-04 Yicheng Fei , Xaq Pitkow

The rapid growth of graph-structured data necessitates partitioning and distributed storage across decentralized systems, driving the emergence of federated graph learning to collaboratively train Graph Neural Networks (GNNs) without…

Machine Learning · Computer Science 2025-09-19 Linfeng Luo , Zhiqi Guo , Fengxiao Tang , Zihao Qiu , Ming Zhao

Graph Neural Networks (GNNs) often struggle with heterophilic data, where connected nodes may have dissimilar labels, as they typically assume homophily and rely on local message passing. To address this, we propose creating alternative…

Machine Learning · Computer Science 2025-06-11 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

Graph generative models have shown strong results in molecular design but struggle to scale to large, complex structures. While hierarchical methods improve scalability, they usually ignore node and edge features, which are critical in…

Machine Learning · Computer Science 2025-10-01 Dorian Gailhard , Enzo Tartaglione , Lirida Naviner , Jhony H. Giraldo

Hypergraph Neural Networks (HGNNs) have recently attracted much attention and exhibited satisfactory performance due to their superiority in high-order correlation modeling. However, it is noticed that the high-order modeling capability of…

Machine Learning · Computer Science 2024-02-20 Yifan Feng , Yihe Luo , Shihui Ying , Yue Gao

Reaction virtual screening and discovery are fundamental challenges in chemistry and materials science, where traditional graph neural networks (GNNs) struggle to model multi-reactant interactions. In this work, we propose ChemHGNN, a…

Machine Learning · Computer Science 2025-06-16 Xiaobao Huang , Yihong Ma , Anjali Gurajapu , Jules Schleinitz , Zhichun Guo , Sarah E. Reisman , Nitesh V. Chawla

Hypercomplex neural networks have proven to reduce the overall number of parameters while ensuring valuable performance by leveraging the properties of Clifford algebras. Recently, hypercomplex linear layers have been further improved by…

Machine Learning · Computer Science 2022-12-16 Eleonora Grassucci , Aston Zhang , Danilo Comminiello

Vision foundation models (FMs) have become the predominant architecture in computer vision, providing highly transferable representations learned from large-scale, multimodal corpora. Nonetheless, they exhibit persistent limitations on…

Computer Vision and Pattern Recognition · Computer Science 2025-08-27 Fatemeh Ziaeetabar

The mining and utilization of features directly affect the classification performance of models used in the classification and recognition of hyperspectral remote sensing images. Traditional models usually conduct feature mining from a…

Computer Vision and Pattern Recognition · Computer Science 2021-06-29 Yunsong Zhao , Yin Li , Zhihan Chen , Tianchong Qiu , Guojin Liu

Graph-based semi-supervised learning, which can exploit the connectivity relationship between labeled and unlabeled data, has been shown to outperform the state-of-the-art in many artificial intelligence applications. One of the most…

Machine Learning · Computer Science 2022-01-28 Jianpeng Liao , Qian Tao , Jun Yan

Fast and reliable optimal power flow (OPF) approximation is essential for reliable smart-grid operation, yet many learning-based surrogates either flatten the native heterogeneous structure of power networks, target a limited set of grid…

Machine Learning · Computer Science 2026-05-25 Massimiliano Lupo Pasini , Yijiang Li , Kibaek Kim , Teja Kuruganti

Molecular interactions have widely been modelled as networks. The local wiring patterns around molecules in molecular networks are linked with their biological functions. However, networks model only pairwise interactions between molecules…

Molecular Networks · Quantitative Biology 2018-09-21 Thomas Gaudelet , Noel Malod-Dognin , Natasa Przulj

Representation learning on heterogeneous graphs aims to obtain meaningful node representations to facilitate various downstream tasks, such as node classification and link prediction. Existing heterogeneous graph learning methods are…

Machine Learning · Computer Science 2022-04-19 Le Yu , Leilei Sun , Bowen Du , Chuanren Liu , Weifeng Lv , Hui Xiong

Recently, knowledge graph (KG) augmented models have achieved noteworthy success on various commonsense reasoning tasks. However, KG edge (fact) sparsity and noisy edge extraction/generation often hinder models from obtaining useful…

Computation and Language · Computer Science 2021-06-07 Jun Yan , Mrigank Raman , Aaron Chan , Tianyu Zhang , Ryan Rossi , Handong Zhao , Sungchul Kim , Nedim Lipka , Xiang Ren

Graph Neural Networks (GNNs) have become powerful tools for learning from graph-structured data, finding applications across diverse domains. However, as graph sizes and connectivity increase, standard GNN training methods face significant…

Machine Learning · Computer Science 2025-12-01 Eshed Gal , Moshe Eliasof , Carola-Bibiane Schönlieb , Ivan I. Kyrchei , Eldad Haber , Eran Treister

Graph Neural Networks (GNNs) have attracted increasing attention in recent years and have achieved excellent performance in semi-supervised node classification tasks. The success of most GNNs relies on one fundamental assumption, i.e., the…

Machine Learning · Computer Science 2024-12-03 Junchao Lin , Yuan Wan , Jingwen Xu , Xingchen Qi