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Recent provably secure linguistic steganography (PSLS) methods rely on mainstream autoregressive language models (ARMs) to address historically challenging tasks, that is, to disguise covert communication as ``innocuous'' natural language…

Cryptography and Security · Computer Science 2026-01-22 Yuang Qi , Na Zhao , Qiyi Yao , Benlong Wu , Weiming Zhang , Nenghai Yu , Kejiang Chen

Recent advances in DNA sequencing open prospects to make whole-genome analysis rapid and reliable, which is promising for various applications including personalized medicine. However, existing techniques for {\it de novo} genome assembly,…

Genome sequence analysis plays a pivotal role in enabling many medical and scientific advancements in personalized medicine, outbreak tracing, and forensics. However, the analysis of genome sequencing data is currently bottlenecked by the…

Hardware Architecture · Computer Science 2021-11-04 Damla Senol Cali

Previous theoretical studies have shown that measuring the transverse current across DNA strands while they translocate through a nanopore or channel may provide a statistically distinguishable signature of the DNA bases, and may thus allow…

Soft Condensed Matter · Physics 2009-11-21 Matt Krems , Michael Zwolak , Yuriy V. Pershin , Massimiliano Di Ventra

DNA storage has emerged as an important area of research. The reliability of DNA storage system depends on designing the DNA strings (called DNA codes) that are sufficiently dissimilar. In this work, we introduce DNA codes that satisfy a…

Information Theory · Computer Science 2022-11-28 Krishna Gopal Benerjee , Sourav Deb , Manish K Gupta

Image steganography can hide information in a host image and obtain a stego image that is perceptually indistinguishable from the original one. This technique has tremendous potential in scenarios like copyright protection, information…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Huayuan Ye , Shenzhuo Zhang , Shiqi Jiang , Jing Liao , Shuhang Gu , Dejun Zheng , Changbo Wang , Chenhui Li

Nanopore sequencing technology has the potential to render other sequencing technologies obsolete with its ability to generate long reads and provide portability. However, high error rates of the technology pose a challenge while generating…

Genomics · Quantitative Biology 2019-12-20 Damla Senol Cali , Jeremie S. Kim , Saugata Ghose , Can Alkan , Onur Mutlu

Generating a photorealistic image with intended human pose is a promising yet challenging research topic for many applications such as smart photo editing, movie making, virtual try-on, and fashion display. In this paper, we present a novel…

Computer Vision and Pattern Recognition · Computer Science 2019-09-19 Wei Sun , Jawadul H. Bappy , Shanglin Yang , Yi Xu , Tianfu Wu , Hui Zhou

Thanks to the fast progress in synthetic media generation, creating realistic false images has become very easy. Such images can be used to wrap "rich" fake news with enhanced credibility, spawning a new wave of high-impact, high-risk…

Computer Vision and Pattern Recognition · Computer Science 2021-04-23 Davide Cozzolino , Justus Thies , Andreas Rössler , Matthias Nießner , Luisa Verdoliva

Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

Genomics · Quantitative Biology 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Recent papers have shown that neural networks obtain state-of-the-art performance on several different sequence tagging tasks. One appealing property of such systems is their generality, as excellent performance can be achieved with a…

Computation and Language · Computer Science 2017-03-21 Zhilin Yang , Ruslan Salakhutdinov , William W. Cohen

Protection of the sensitive content is crucial for extensive information sharing. We present a technique of information concealing, based on introduction and maintenance of families of repeats. Repeats in DNA constitute a basic obstacle for…

Information Theory · Computer Science 2009-04-29 Lukas Kencl , Martin Loebl

DNA-coated particles are promising as building blocks for functional and finite-sized assemblies because they can be programmed with orthogonal interactions owing to the sequence-specific hybridization of DNA strands. To fully exploit this…

Soft Condensed Matter · Physics 2026-04-17 T. C. M. Stevens , A. van der Sluis , I. K. Voets , P. G. Moerman

Molecular representation is a critical element in our understanding of the physical world and the foundation for modern molecular machine learning. Previous molecular machine learning models have employed strings, fingerprints, global…

Machine Learning · Computer Science 2025-05-28 Daniil A. Boiko , Thiago Reschützegger , Benjamin Sanchez-Lengeling , Samuel M. Blau , Gabe Gomes

Ensuring the legal usage of deep models is crucial to promoting trustable, accountable, and responsible artificial intelligence innovation. Current passport-based methods that obfuscate model functionality for license-to-use and ownership…

Cryptography and Security · Computer Science 2024-04-04 Qi Cui , Ruohan Meng , Chaohui Xu , Chip-Hong Chang

DNA sequence encoding is fundamental to gene function prediction, protein synthesis, and diverse downstream biological tasks. Despite the substantial progress achieved by large-scale DNA sequence pretraining, existing studies have…

Machine Learning · Computer Science 2026-04-21 Zhijiang Tang , Jiaxin Qi , Yan Cui , Jinli Ou , Yuhua Zheng , Jianqiang Huang

We propose a new compression scheme for genomic data given as sequence fragments called reads. The scheme uses a reference genome at the decoder side only, freeing the encoder from the burdens of storing references and performing…

Information Theory · Computer Science 2023-02-10 Yotam Gershon , Yuval Cassuto

With the advancement of communication technology,data is exchanged digitally over the network. At the other side the technology is also proven as a tool for unauthorized access to attackers. Thus the security of data to be transmitted…

Multimedia · Computer Science 2014-07-11 Manisha Rana , Rohit Tanwar

The idea is a nanoscale extension of a sporting event called a `color run'. The filament is wrapped with a DNA origami `barrel', which acts as the nanoscale equivalent of a white t-shirt. The DNA t-shirt has dangling ss-DNA `handles' that…

Soft Condensed Matter · Physics 2019-09-16 A. P. Micolich

Steganography refers to the art of concealing secret messages within multiple media carriers so that an eavesdropper is unable to detect the presence and content of the hidden messages. In this paper, we firstly propose a novel…

Cryptography and Security · Computer Science 2019-06-05 Zheng Li , Ge Han , Yunqing Wei , Shanqing Guo