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Related papers: An evaluation of DeepSeek Models in Biomedical Nat…

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Recognizing entities in texts is a central need in many information-seeking scenarios, and indeed, Named Entity Recognition (NER) is arguably one of the most successful examples of a widely adopted NLP task and corresponding NLP technology.…

Computation and Language · Computer Science 2023-10-24 Uri Katz , Matan Vetzler , Amir DN Cohen , Yoav Goldberg

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

With the increasing application of large language models (LLMs) in the medical domain, evaluating these models' performance using benchmark datasets has become crucial. This paper presents a comprehensive survey of various benchmark…

The rapid growth of biomedical literature poses challenges for manual knowledge curation and synthesis. Biomedical Natural Language Processing (BioNLP) automates the process. While Large Language Models (LLMs) have shown promise in general…

Pre-trained transformer language models (LMs) have in recent years become the dominant paradigm in applied NLP. These models have achieved state-of-the-art performance on tasks such as information extraction, question answering, sentiment…

Computation and Language · Computer Science 2025-04-14 Aidan Mannion , Thierry Chevalier , Didier Schwab , Lorraine Geouriot

Deep neural network models have recently achieved state-of-the-art performance gains in a variety of natural language processing (NLP) tasks (Young, Hazarika, Poria, & Cambria, 2017). However, these gains rely on the availability of large…

Computation and Language · Computer Science 2018-11-15 Maximilian Hofer , Andrey Kormilitzin , Paul Goldberg , Alejo Nevado-Holgado

This study investigates whether large language models (LLMs) mirror human neurocognition during abstract reasoning. We compared the performance and neural representations of human participants with those of eight open-source LLMs on an…

Neurons and Cognition · Quantitative Biology 2025-08-15 Christopher Pinier , Sonia Acuña Vargas , Mariia Steeghs-Turchina , Dora Matzke , Claire E. Stevenson , Michael D. Nunez

Large language models (LLMs) are incredible and versatile tools for text-based tasks that have enabled countless, previously unimaginable, applications. Retrieval models, in contrast, have not yet seen such capable general-purpose models…

Information Retrieval · Computer Science 2025-09-10 Julian Killingback , Hamed Zamani

Due to the exponential growth of biomedical literature, event and relation extraction are important tasks in biomedical text mining. Most work only focus on relation extraction, and detect a single entity pair mention on a short span of…

Computation and Language · Computer Science 2020-05-08 Elaheh ShafieiBavani , Antonio Jimeno Yepes , Xu Zhong , David Martinez Iraola

Entity Linking (EL), the task of mapping textual entity mentions to their corresponding entries in knowledge bases, constitutes a fundamental component of natural language understanding. Recent advancements in Large Language Models (LLMs)…

Computation and Language · Computer Science 2025-11-19 Jiajun Hou , Chenyu Zhang , Rui Meng

Large Language Models (LLMs) have shown remarkable capabilities across various fields. However, their performance in technical domains such as telecommunications remains underexplored. This paper evaluates two open-source LLMs, Gemma 3 27B…

Networking and Internet Architecture · Computer Science 2025-09-29 Arina Caraus , Alessio Buscemi , Sumit Kumar , Ion Turcanu

The rise of large language models (LLMs) has significantly impacted various domains, including natural language processing (NLP) and image generation, by making complex computational tasks more accessible. While LLMs demonstrate impressive…

Databases · Computer Science 2024-10-15 Ananya Rahaman , Anny Zheng , Mostafa Milani , Fei Chiang , Rachel Pottinger

Large language models (LLMs) have shown remarkable capabilities in Natural Language Processing (NLP), especially in domains where labeled data is scarce or expensive, such as clinical domain. However, to unlock the clinical knowledge hidden…

Computation and Language · Computer Science 2023-09-18 Sonish Sivarajkumar , Mark Kelley , Alyssa Samolyk-Mazzanti , Shyam Visweswaran , Yanshan Wang

Large Reasoning Models (LRMs) such as DeepSeek-R1 and OpenAI o1 have demonstrated remarkable capabilities in various reasoning tasks. Their strong capability to generate and reason over intermediate thoughts has also led to arguments that…

Computation and Language · Computer Science 2025-10-17 Saurabh Srivastava , Ziyu Yao

Backgrounds: Information extraction (IE) is critical in clinical natural language processing (NLP). While large language models (LLMs) excel on generative tasks, their performance on extractive tasks remains debated. Methods: We…

The safe deployment of large language models (LLMs) in high-stakes fields like biomedicine, requires them to be able to reason about cause and effect. We investigate this ability by testing 13 open-source LLMs on a fundamental task:…

Computation and Language · Computer Science 2026-03-13 Sydney Anuyah , Sneha Shajee-Mohan , Ankit-Singh Chauhan , Sunandan Chakraborty

Large Language Models (LLMs) are transforming AI across industries, but their development and deployment remain complex. This survey reviews 16 key challenges in building and using LLMs and examines how these challenges are addressed by two…

Computation and Language · Computer Science 2025-09-01 Shubham Sharma , Sneha Tuli , Narendra Badam

Identifying relevant text spans is important for several downstream tasks in NLP, as it contributes to model explainability. While most span identification approaches rely on relatively smaller pre-trained language models like BERT, a few…

Computation and Language · Computer Science 2026-01-05 Alphaeus Dmonte , Roland Oruche , Tharindu Ranasinghe , Marcos Zampieri , Prasad Calyam

Recent developments in large language models (LLMs) have shown promise in enhancing the capabilities of natural language processing (NLP). Despite these successes, there remains a dearth of research dedicated to the NLP problem-solving…

Computation and Language · Computer Science 2023-10-20 Linxin Song , Jieyu Zhang , Lechao Cheng , Pengyuan Zhou , Tianyi Zhou , Irene Li

Recent advancements in the field of Natural Language Processing, particularly the development of large-scale language models that are pretrained on vast amounts of knowledge, are creating novel opportunities within the realm of Knowledge…

Computation and Language · Computer Science 2023-10-06 Anisa Rula , Jennifer D'Souza