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This survey analyses the role of data-driven methodologies for pandemic modelling and control. We provide a roadmap from the access to epidemiological data sources to the control of epidemic phenomena. We review the available methodologies…

Systems and Control · Electrical Eng. & Systems 2021-08-23 Teodoro Alamo , Daniel G. Reina , Pablo Millán Gata , Victor M. Preciado , Giulia Giordano

The equations of complex dynamical systems may not be identified by expert knowledge, especially if the underlying mechanisms are unknown. Data-driven discovery methods address this challenge by inferring governing equations from…

Machine Learning · Computer Science 2026-02-05 Amit K. Chakraborty , Hao Wang , Pouria Ramazi

The last decade saw the advent of increasingly realistic epidemic models that leverage on the availability of highly detailed census and human mobility data. Data-driven models aim at a granularity down to the level of households or single…

Populations and Evolution · Quantitative Biology 2011-08-10 Nicola Perra , Duygu Balcan , Bruno Gonçalves , Alessandro Vespignani

Data limitation is one of the most common issues in training machine learning classifiers for medical applications. Due to ethical concerns and data privacy, the number of people that can be recruited to such experiments is generally…

Audio and Speech Processing · Electrical Eng. & Systems 2020-04-14 Bahman Mirheidari , Yilin Pan , Daniel Blackburn , Ronan O'Malley , Traci Walker , Annalena Venneri , Markus Reuber , Heidi Christensen

To forecast the time dynamics of an epidemic, we propose a discrete stochastic model that unifies and generalizes previous approaches to the subject. Viewing a given population of individuals or groups of individuals with given health state…

Since the beginning of the COVID-19 pandemic, researchers have developed deep learning models to classify COVID-19 induced pneumonia. As with many medical imaging tasks, the quality and quantity of the available data is often limited. In…

Image and Video Processing · Electrical Eng. & Systems 2021-12-15 Daniel Schaudt , Christopher Kloth , Christian Spaete , Andreas Hinteregger , Meinrad Beer , Reinhold von Schwerin

Objective: The use of deep learning for electroencephalography (EEG) classification tasks has been rapidly growing in the last years, yet its application has been limited by the relatively small size of EEG datasets. Data augmentation,…

Machine Learning · Computer Science 2022-11-16 Cédric Rommel , Joseph Paillard , Thomas Moreau , Alexandre Gramfort

Data augmentation plays a key role in modern machine learning pipelines. While numerous augmentation strategies have been studied in the context of computer vision and natural language processing, less is known for other data modalities.…

Machine Learning · Statistics 2022-05-23 Elliott Gordon-Rodriguez , Thomas P. Quinn , John P. Cunningham

Modeling the time-series of high-dimensional, longitudinal data is important for predicting patient disease progression. However, existing neural network based approaches that learn representations of patient state, while very flexible, are…

Machine Learning · Computer Science 2021-06-21 Zeshan Hussain , Rahul G. Krishnan , David Sontag

Data augmentation is a popular technique which helps improve generalization capabilities of deep neural networks. It plays a pivotal role in remote-sensing scenarios in which the amount of high-quality ground truth data is limited, and…

Computer Vision and Pattern Recognition · Computer Science 2019-03-14 Jakub Nalepa , Michal Myller , Michal Kawulok

The COVID-19 pandemic has created unprecedented challenges worldwide. Strained healthcare providers make difficult decisions on patient triage, treatment and care management on a daily basis. Policy makers have imposed social distancing…

Joint models for longitudinal and time-to-event data are commonly used in longitudinal studies to forecast disease trajectories over time. While there are many advantages to joint modeling, the standard forms suffer from limitations that…

Machine Learning · Statistics 2019-09-09 Bryan Lim , Mihaela van der Schaar

Data augmentation is a widely used trick when training deep neural networks: in addition to the original data, properly transformed data are also added to the training set. However, to the best of our knowledge, a clear mathematical…

Machine Learning · Statistics 2020-11-10 Shuxiao Chen , Edgar Dobriban , Jane H Lee

Deep neural networks are increasingly being used to detect and diagnose medical conditions using medical imaging. Despite their utility, these models are highly vulnerable to adversarial attacks and distribution shifts, which can affect…

Image and Video Processing · Electrical Eng. & Systems 2025-06-23 Josué Martínez-Martínez , Olivia Brown , Mostafa Karami , Sheida Nabavi

This paper proposes a novel approach to predict epidemiological parameters by integrating new real-time signals from various sources of information, such as novel social media-based population density maps and Air Quality data. We implement…

Machine Learning · Computer Science 2023-07-04 Romain Molinas , César Quilodrán Casas , Rossella Arcucci , Ovidiu Şerban

The COVID-19 pandemic represents the most significant public health disaster since the 1918 influenza pandemic. During pandemics such as COVID-19, timely and reliable spatio-temporal forecasting of epidemic dynamics is crucial. Deep…

Machine Learning · Computer Science 2020-11-25 Lijing Wang , Aniruddha Adiga , Srinivasan Venkatramanan , Jiangzhuo Chen , Bryan Lewis , Madhav Marathe

We have devised a data-driven framework for uncovering hidden control strategies used by an evolutionary system described by an evolutionary probability distribution. This innovative framework enables deciphering of the concealed mechanisms…

Populations and Evolution · Quantitative Biology 2023-09-28 Nourddine Azzaoui , Tomoko Matsui , Daisuke Murakami

The ongoing need for effective epidemic modeling has driven advancements in capturing the complex dynamics of infectious diseases. Traditional models, such as Susceptible-Infected-Recovered, and graph-based approaches often fail to account…

Social and Information Networks · Computer Science 2025-04-02 Songyuan Liu , Shengbo Gong , Tianning Feng , Zewen Liu , Max S. Y. Lau , Wei Jin

Epidemiological forecasting from surveillance data is a hard problem and hybridizing mechanistic compartmental models with neural models is a natural direction. The mechanistic structure helps keep trajectories epidemiologically plausible,…

Machine Learning · Computer Science 2026-02-09 Yiqi Su , Ray Lee , Jiaming Cui , Naren Ramakrishnan

As more and more artificial intelligence (AI) technologies move from the laboratory to real-world applications, the open-set and robustness challenges brought by data from the real world have received increasing attention. Data augmentation…

Machine Learning · Computer Science 2022-12-09 Zhendong Liu , Wenyu Jiang , Min guo , Chongjun Wang