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Hypergraphs offer a generalized framework for capturing high-order relationships between entities and have been widely applied in various domains, including healthcare, social networks, and bioinformatics. Hypergraph neural networks, which…

Machine Learning · Computer Science 2025-12-03 Akash Choudhuri , Yongjian Zhong , Bijaya Adhikari

Concept Bottleneck Models (CBMs) provide explicit interpretations for deep neural networks through concepts and allow intervention with concepts to adjust final predictions. Existing CBMs assume concepts are conditionally independent given…

Machine Learning · Computer Science 2026-05-04 Haotian Xu , Tsui-Wei Weng , Lam M. Nguyen , Tengfei Ma

Heterogeneous Graph Neural Network (HGNN) has been successfully employed in various tasks, but we cannot accurately know the importance of different design dimensions of HGNNs due to diverse architectures and applied scenarios. Besides, in…

Machine Learning · Computer Science 2022-05-16 Tianyu Zhao , Cheng Yang , Yibo Li , Quan Gan , Zhenyi Wang , Fengqi Liang , Huan Zhao , Yingxia Shao , Xiao Wang , Chuan Shi

Graph Convolutional Network (GCN) has achieved extraordinary success in learning effective task-specific representations of nodes in graphs. However, regarding Heterogeneous Information Network (HIN), existing HIN-oriented GCN methods still…

Machine Learning · Computer Science 2021-09-09 Yaming Yang , Ziyu Guan , Jianxin Li , Wei Zhao , Jiangtao Cui , Quan Wang

Accurate prediction of molecular properties is essential in drug discovery and related fields. However, existing graph neural networks (GNNs) often struggle to simultaneously capture both local and global molecular structures. In this work,…

Machine Learning · Computer Science 2025-08-26 XiaYu Liu , Chao Fan , Yang Liu , Hou-biao Li

Recent years have witnessed the rapid development of heterogeneous graph neural networks (HGNNs) in information retrieval (IR) applications. Many existing HGNNs design a variety of tailor-made graph convolutions to capture structural and…

Machine Learning · Computer Science 2023-08-15 Chenguang Du , Kaichun Yao , Hengshu Zhu , Deqing Wang , Fuzhen Zhuang , Hui Xiong

Recently, significant attention has been given to the idea of viewing relational databases as heterogeneous graphs, enabling the application of graph neural network (GNN) technology for predictive tasks. However, existing GNN methods…

Machine Learning · Computer Science 2025-02-26 Francesco Ferrini , Antonio Longa , Andrea Passerini , Manfred Jaeger

Heterogeneous graph convolutional networks have gained great popularity in tackling various network analytical tasks on heterogeneous network data, ranging from link prediction to node classification. However, most existing works ignore the…

Social and Information Networks · Computer Science 2022-08-15 Pengyang Yu , Chaofan Fu , Yanwei Yu , Chao Huang , Zhongying Zhao , Junyu Dong

Omics data, such as transcriptomics, proteomics, and metabolomics, provide critical insights into disease mechanisms and clinical outcomes. However, their high dimensionality, small sample sizes, and intricate biological networks pose major…

Machine Learning · Computer Science 2026-01-22 Tiantian Yang , Yuxuan Wang , Zhenwei Zhou , Ching-Ti Liu

A connectional brain template (CBT) is a normalized graph-based representation of a population of brain networks also regarded as an average connectome. CBTs are powerful tools for creating representative maps of brain connectivity in…

Computer Vision and Pattern Recognition · Computer Science 2020-12-29 Mustafa Burak Gurbuz , Islem Rekik

Recent studies have highlighted the limitations of message-passing based graph neural networks (GNNs), e.g., limited model expressiveness, over-smoothing, over-squashing, etc. To alleviate these issues, Graph Transformers (GTs) have been…

Machine Learning · Computer Science 2023-03-06 Qiheng Mao , Zemin Liu , Chenghao Liu , Jianling Sun

Graph neural networks (GNN) are a powerful tool for combining imaging and non-imaging medical information for node classification tasks. Cross-network node classification extends GNN techniques to account for domain drift, allowing for node…

Social and Information Networks · Computer Science 2024-01-12 Anna Stephens , Francisco Santos , Pang-Ning Tan , Abdol-Hossein Esfahanian

Heterogeneous temporal graphs (HTGs) are ubiquitous data structures in the real world. Recently, to enhance representation learning on HTGs, numerous attention-based neural networks have been proposed. Despite these successes, existing…

Machine Learning · Computer Science 2025-10-22 Yili Wang , Tairan Huang , Changlong He , Qiutong Li , Jianliang Gao

With growing demand for interpretability in deep learning, especially in high stakes domains, Concept Bottleneck Models (CBMs) address this by inserting human understandable concepts into the prediction pipeline, but they are generally…

Computer Vision and Pattern Recognition · Computer Science 2025-10-02 Jiakai Lin , Jinchang Zhang , Guoyu Lu

Graph Neural Networks (GNNs) have become a standard approach for learning from graph-structured data. However, their reliance on parametric classifiers (most often linear softmax layers) limits interpretability and sometimes hinders…

Machine Learning · Computer Science 2026-02-03 Zeljko Bolevic , Milos Brajovic , Isidora Stankovic , Ljubisa Stankovic

Graph-based semi-supervised node classification has been shown to become a state-of-the-art approach in many applications with high research value and significance. Most existing methods are only based on the original intrinsic or…

Machine Learning · Computer Science 2023-06-08 Jianpeng Liao , Jun Yan , Qian Tao

Visual dialogue is a challenging task that needs to extract implicit information from both visual (image) and textual (dialogue history) contexts. Classical approaches pay more attention to the integration of the current question, vision…

Computer Vision and Pattern Recognition · Computer Science 2020-08-31 Xiaoze Jiang , Siyi Du , Zengchang Qin , Yajing Sun , Jing Yu

Despite their success in various domains, the growing dependence on GNNs raises a critical concern about the nature of the combinatorial reasoning underlying their predictions, which is often hidden within their black-box architectures.…

Machine Learning · Computer Science 2026-03-03 Yue Niu , Zhaokai Sun , Jiayi Yang , Xiaofeng Cao , Rui Fan , Xin Sun , Hanli Wang , Wei Ye

Heterogeneous Graph Neural Networks (HGNNs) are effective for modeling Heterogeneous Information Networks (HINs), which encode complex multi-typed entities and relations. However, HGNNs often suffer from type information loss and structural…

Machine Learning · Computer Science 2025-12-12 Ming-Yi Hong , Miao-Chen Chiang , Youchen Teng , Yu-Hsiang Wang , Chih-Yu Wang , Che Lin

Deep neural networks are a key component of behavior prediction and motion generation for self-driving cars. One of their main drawbacks is a lack of transparency: they should provide easy to interpret rationales for what triggers certain…

Computer Vision and Pattern Recognition · Computer Science 2020-05-12 Jinkyu Kim , Mayank Bansal