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Scientific document representation learning provides powerful embeddings for various tasks, while current methods face challenges across three approaches. 1) Contrastive training with citation-structural signals underutilizes citation…

Information Retrieval · Computer Science 2025-09-10 Zheng Dou , Deqing Wang , Fuzhen Zhuang , Jian Ren , Yanlin Hu

Estimating the sharing of genetic effects across different conditions is important to many statistical analyses of genomic data. The patterns of sharing arising from these data are often highly heterogeneous. To flexibly model these…

Methodology · Statistics 2024-06-14 Yunqi Yang , Peter Carbonetto , David Gerard , Matthew Stephens

In multiple testing problems, where a large number of hypotheses are tested simultaneously, false discovery rate (FDR) control can be achieved with the well-known Benjamini-Hochberg procedure, which adapts to the amount of signal present in…

Methodology · Statistics 2017-09-14 Ang Li , Rina Foygel Barber

In many existing methods in multiple comparison, one starts with either Fisher's p-values or the local fdr scores. The former one, with a usual definition as the tail probability exceeding the observed test statistic under the null…

Methodology · Statistics 2021-04-13 Zhigen Zhao

The large-scale multiple testing inherent to high throughput biological data necessitates very high statistical stringency and thus true effects in data are difficult to detect unless they have high effect sizes. One promising approach for…

Methodology · Statistics 2022-03-14 Mohamad Hasan , Paul Schliekelman

In recent years, real-world external controls have grown in popularity as a tool to empower randomized placebo-controlled trials, particularly in rare diseases or cases where balanced randomization is unethical or impractical. However, as…

Methodology · Statistics 2024-11-14 Chenyin Gao , Shu Yang , Mingyang Shan , Wenyu Ye , Ilya Lipkovich , Douglas Faries

This paper presents simple and efficient methods to mitigate sampling bias in active learning while achieving state-of-the-art accuracy and model robustness. We introduce supervised contrastive active learning by leveraging the contrastive…

Machine Learning · Computer Science 2021-09-15 Ranganath Krishnan , Alok Sinha , Nilesh Ahuja , Mahesh Subedar , Omesh Tickoo , Ravi Iyer

In this paper, we address the normal mean inference problem, which involves testing multiple means of normal random variables with heteroscedastic variances. Most existing empirical Bayes methods for this setting are developed under…

Methodology · Statistics 2026-01-01 Kwangok Seo , Johan Lim , Kaiwen Wang , Dohwan Park , Shota Katayama , Xinlei Wang

This paper continues the line of research initiated in Liu et. al. (2016) on developing a novel framework for multiple testing of hypotheses grouped in a one-way classified form using hypothesis-specific local false discovery rates…

Methodology · Statistics 2022-11-22 Sanat K. Sarkar , Zhigen Zhao

In an empirical Bayesian setting, we provide a new multiple testing method, useful when an additional covariate is available, that influences the probability of each null hypothesis being true. We measure the posterior significance of each…

Applications · Statistics 2008-07-30 Egil Ferkingstad , Arnoldo Frigessi , Håvard Rue , Gudmar Thorleifsson , Augustine Kong

Conditional contrastive learning frameworks consider the conditional sampling procedure that constructs positive or negative data pairs conditioned on specific variables. Fair contrastive learning constructs negative pairs, for example,…

Machine Learning · Computer Science 2022-03-16 Yao-Hung Hubert Tsai , Tianqin Li , Martin Q. Ma , Han Zhao , Kun Zhang , Louis-Philippe Morency , Ruslan Salakhutdinov

The e-BH procedure is an e-value-based multiple testing procedure that provably controls the false discovery rate (FDR) under any dependence structure between the e-values. Despite this appealing theoretical FDR control guarantee, the e-BH…

Methodology · Statistics 2024-04-29 Junu Lee , Zhimei Ren

Local class imbalance and data heterogeneity across clients often trap prototype-based federated contrastive learning in a prototype bias loop: biased local prototypes induced by imbalanced data are aggregated into biased global prototypes,…

Machine Learning · Computer Science 2026-03-04 Tian-Shuang Wu , Shen-Huan Lyu , Ning Chen , Yi-Xiao He , Bing Tang , Baoliu Ye , Qingfu Zhang

Bayesian Federated Learning (FL) has been recently introduced to provide well-calibrated Machine Learning (ML) models quantifying the uncertainty of their predictions. Despite their advantages compared to frequentist FL setups, Bayesian FL…

Machine Learning · Computer Science 2024-05-12 Luca Barbieri , Stefano Savazzi , Monica Nicoli

Many existing unsupervised domain adaptation (UDA) methods primarily focus on covariate shift, limiting their effectiveness in imbalanced domain adaptation (IDA) where both covariate shift and label shift coexist. Recent IDA methods have…

Computer Vision and Pattern Recognition · Computer Science 2024-12-31 Xiaona Sun , Zhenyu Wu , Zhiqiang Zhan , Yang Ji

Standard conformal prediction methods provide a marginal coverage guarantee, which means that for a random test point, the conformal prediction set contains the true label with a user-specified probability. In many classification problems,…

Bayesian approaches for handling covariate measurement error are well established, and yet arguably are still relatively little used by researchers. For some this is likely due to unfamiliarity or disagreement with the Bayesian inferential…

Methodology · Statistics 2017-08-01 Jonathan W. Bartlett , Ruth H. Keogh

Recommender systems are widely deployed in various web environments, and self-supervised learning (SSL) has recently attracted significant attention in this field. Contrastive learning (CL) stands out as a major SSL paradigm due to its…

Information Retrieval · Computer Science 2025-01-17 Yu Zhang , Lei Sang , Yi Zhang , Yiwen Zhang , Yun Yang

In various natural language processing (NLP) tasks, fine-tuning Pre-trained Language Models (PLMs) often leads to the issue of spurious correlations, which negatively impacts performance, particularly when dealing with out-of-distribution…

Computation and Language · Computer Science 2025-04-17 Suyoung Bae , Hyojun Kim , YunSeok Choi , Jee-Hyong Lee

Clinical trials with a hybrid control arm (a control arm constructed from a combination of randomized patients and real-world data on patients receiving usual care in standard clinical practice) have the potential to decrease the cost of…

Methodology · Statistics 2021-08-20 Joanna Harton , Brian Segal , Ronac Mamtani , Nandita Mitra , Rebecca Hubbard
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