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Within clinical, biomedical, and translational science, an increasing number of projects are adopting graphs for knowledge representation. Graph-based data models elucidate the interconnectedness between core biomedical concepts, enable…

The reuse of atomistic simulation data is often limited by heterogeneous formats, incomplete metadata, and a lack of standardized representations of workflows and provenance. Here we present an ontology-based infrastructure for representing…

Databases · Computer Science 2026-04-09 Abril Azocar Guzman , Sarath Menon , Tilmann Hickel , Stefan Sandfeld

Existing data-centric methods for protein science generally cannot sufficiently capture and leverage biology knowledge, which may be crucial for many protein tasks. To facilitate research in this field, we create ProteinKG65, a knowledge…

Quantitative Methods · Quantitative Biology 2022-11-15 Siyuan Cheng , Xiaozhuan Liang , Zhen Bi , Huajun Chen , Ningyu Zhang

System engineering has been shifting from document-centric to model-based approaches, where assets are becoming more and more digital. Although digitisation conveys several benefits, it also brings several concerns (e.g., storage and…

Software Engineering · Computer Science 2025-12-11 Arkadiusz Ryś , Lucas Lima , Joeri Exelmans , Dennis Janssens , Hans Vangheluwe

The growing trend of Large Language Models (LLM) development has attracted significant attention, with models for various applications emerging consistently. However, the combined application of Large Language Models with semantic…

Computation and Language · Computer Science 2023-05-09 Milena Trajanoska , Riste Stojanov , Dimitar Trajanov

In today's data-driven world, the ability to extract meaningful information from data is becoming essential for businesses, organizations and researchers alike. For that purpose, a wide range of tools and systems exist addressing…

Machine Learning · Computer Science 2026-03-24 Gerard Pons , Besim Bilalli , Anna Queralt

In recent years, countless research papers have addressed the topics of knowledge graph creation, extension, or completion in order to create knowledge graphs that are larger, more correct, or more diverse. This research is typically…

Artificial Intelligence · Computer Science 2023-08-22 Nicolas Heist , Sven Hertling , Heiko Paulheim

The Knowledge Graph-to-Text Generation task aims to convert structured knowledge graphs into coherent and human-readable natural language text. Recent efforts in this field have focused on enhancing pre-trained language models (PLMs) by…

Computation and Language · Computer Science 2024-09-24 Shanshan Wang , Chun Zhang , Ning Zhang

The preservation of intangible cultural heritage is a critical challenge as collective memory fades over time. While Large Language Models (LLMs) offer a promising avenue for generating engaging narratives, their propensity for factual…

Artificial Intelligence · Computer Science 2026-04-06 Naga Sowjanya Barla , Jacopo de Berardinis

Knowledge Graphs (KGs) play a pivotal role in advancing various AI applications, with the semantic web community's exploration into multi-modal dimensions unlocking new avenues for innovation. In this survey, we carefully review over 300…

Knowledge graphs (KGs) are widely used for representing and organizing structured knowledge in diverse domains. However, the creation and upkeep of KGs pose substantial challenges. Developing a KG demands extensive expertise in data…

Information Retrieval · Computer Science 2023-09-19 Samira Babalou , Sheeba Samuel , Birgitta König-Ries

We introduce an approach to discovery informatics that uses so called knowledge graphs as the essential representation structure. Knowledge graph is an umbrella term that subsumes various approaches to tractable representation of large…

Artificial Intelligence · Computer Science 2015-04-29 Vit Novacek

Leveraging generative Artificial Intelligence (AI), we have transformed a dataset comprising 1,000 scientific papers into an ontological knowledge graph. Through an in-depth structural analysis, we have calculated node degrees, identified…

Machine Learning · Computer Science 2024-06-12 Markus J. Buehler

Knowledge Graphs (KG) have gained increasing importance in science, business and society in the last years. However, most knowledge graphs were either extracted or compiled from existing sources. There are only relatively few examples where…

Digital Libraries · Computer Science 2022-11-23 Hassan Hussein , Allard Oelen , Oliver Karras , Sören Auer

A scientific paper can be divided into two major constructs which are Metadata and Full-body text. Metadata provides a brief overview of the paper while the Full-body text contains key-insights that can be valuable to fellow researchers. To…

Digital Libraries · Computer Science 2023-08-28 Azanzi Jiomekong , Sanju Tiwari

Knowledge graphs (KGs) are crucial for representing and reasoning over structured information, supporting a wide range of applications such as information retrieval, question answering, and decision-making. However, their effectiveness is…

Computation and Language · Computer Science 2024-12-13 Udari Madhushani Sehwag , Kassiani Papasotiriou , Jared Vann , Sumitra Ganesh

Knowledge graph construction typically relies either on predefined ontologies or on schema-free extraction. Ontology-driven pipelines enforce consistent typing but require costly schema design and maintenance, whereas schema-free methods…

Artificial Intelligence · Computer Science 2026-04-07 Mohammad Sadeq Abolhasani , Yang Ba , Yixuan He , Rong Pan

Despite widespread applications of knowledge graphs (KGs) in various tasks such as question answering and intelligent conversational systems, existing KGs face two major challenges: information granularity and deficiency in timeliness.…

Artificial Intelligence · Computer Science 2024-05-01 Linyi Ding , Sizhe Zhou , Jinfeng Xiao , Jiawei Han

Reasoning over temporal knowledge graphs (TKGs) is fundamental to improving the efficiency and reliability of intelligent decision-making systems and has become a key technological foundation for future artificial intelligence applications.…

Computation and Language · Computer Science 2026-01-05 Wang Xing , Wei Song , Siyu Lin , Chen Wu , Zhesi Li , Man Wang

Knowledge Graphs (KGs) and their machine learning counterpart, Knowledge Graph Embedding Models (KGEMs), have seen ever-increasing use in a wide variety of academic and applied settings. In particular, KGEMs are typically applied to KGs to…

Machine Learning · Computer Science 2024-12-16 Jeffrey Sardina , John D. Kelleher , Declan O'Sullivan