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We introduce time-ordered multibody interactions to describe complex systems manifesting temporal as well as multibody dependencies. First, we show how the dynamics of multivariate Markov chains can be decomposed in ensembles of…

Physics and Society · Physics 2023-10-17 Unai Alvarez-Rodriguez , Luka V. Petrović , Ingo Scholtes

The pair correlation function (PCF) has proven an effective tool for analyzing many physical systems due to its simplicity and its applicability to simulated and experimental data. However, as an averaged quantity, the PCF can fail to…

Disordered Systems and Neural Networks · Physics 2023-12-14 Vasco M. Worlitzer , Gil Ariel , Emanuel A. Lazar

The predictive accuracy of Machine Learning (ML) models of molecular properties depends on the choice of the molecular representation. Based on the postulates of quantum mechanics, we introduce a hierarchy of representations which meet…

Chemical Physics · Physics 2016-11-23 Bing Huang , O. Anatole von Lilienfeld

We investigate the problem of image retrieval based on visual queries when the latter comprise arbitrary regions-of-interest (ROI) rather than entire images. Our proposal is a compact image descriptor that combines the state-of-the-art in…

Computer Vision and Pattern Recognition · Computer Science 2017-03-22 Aaron Chadha , Yiannis Andreopoulos

Machine learning (ML) can be used to construct surrogate models for the fast prediction of a property of interest. ML can thus be applied to chemical projects, where the usual experimentation or calculation techniques can take hours or days…

Due to the wide range of timescales that are present in macromolecular systems, hierarchical multiscale strategies are necessary for their computational study. Coarse-graining (CG) allows to establish a link between different system…

In this paper we study the applicability of a set of supervised machine learning (ML) models specifically trained to infer observed related properties of the baryonic component (stars and gas) from a set of features of dark matter only…

Recently, there has been substantial progress in methods of identifying local integrals of motion in interacting integrable models or in systems with many-body localization. We show that one of these approaches can be utilized for…

Strongly Correlated Electrons · Physics 2018-02-06 Andrzej Wieckowski , Maciej M. Maska , Marcin Mierzejewski

High-precision cellular-based localization is one of the key technologies for next-generation communication systems. In this paper, we investigate the potential of applying machine learning (ML) to a massive multiple-input multiple-output…

Signal Processing · Electrical Eng. & Systems 2023-03-08 Guoda Tian , Ilayda Yaman , Michiel Sandra , Xuesong Cai , Liang Liu , Fredrik Tufvesson

We estimate polarizabilities of atoms in molecules without electron density, using a Voronoi tesselation approach instead of conventional density partitioning schemes. The resulting atomic dispersion coefficients are calculated, as well as…

Chemical Physics · Physics 2015-08-31 Tristan Bereau , O. Anatole von Lilienfeld

Few-shot learning is devoted to training a model on few samples. Most of these approaches learn a model based on a pixel-level or global-level feature representation. However, using global features may lose local information, and using…

Computer Vision and Pattern Recognition · Computer Science 2021-12-07 Haoxing Chen , Huaxiong Li , Yaohui Li , Chunlin Chen

The enormous structural and chemical diversity of metal-organic frameworks (MOFs) forces researchers to actively use simulation techniques on an equal footing with experiments. MOFs are widely known for outstanding adsorption properties, so…

Materials Science · Physics 2021-11-22 Vadim V. Korolev , Yurii M. Nevolin , Thomas A. Manz , Pavel V. Protsenko

Most current results on coverage control using mobile sensors require that one partitioned cell is associated with precisely one sensor. In this paper, we consider a class of coverage control problems involving higher order Voronoi…

Systems and Control · Computer Science 2018-02-13 Bomin Jiang , Zhiyong Sun , Brian D. O. Anderson , Christian Lageman

We review methods that allow one to detect and characterise quantum correlations in many-body systems, with a special focus on approaches which are scalable. Namely, those applicable to systems with many degrees of freedom, without…

Quantum Physics · Physics 2023-09-28 Irénée Frérot , Matteo Fadel , Maciej Lewenstein

One essential ingredient in many machine learning (ML) based methods for atomistic modeling of materials and molecules is the use of locality. While allowing better system-size scaling, this systematically neglects long-range (LR) effects,…

Chemical Physics · Physics 2023-10-05 Kevin K. Huguenin-Dumittan , Philip Loche , Ni Haoran , Michele Ceriotti

Molecular property prediction is a fundamental task in the drug and material industries. Physically, the properties of a molecule are determined by its own electronic structure, which is a quantum many-body system and can be exactly…

Machine Learning · Computer Science 2022-10-21 Lihang Liu , Donglong He , Xiaomin Fang , Shanzhuo Zhang , Fan Wang , Jingzhou He , Hua Wu

A Voronoi diagram is a basic geometric structure that partitions the space into regions associated with a given set of sites, such that all points in a region are closer to the corresponding site than to all other sites. While being…

Computational Geometry · Computer Science 2023-01-27 Tobias Friedrich , Maximilian Katzmann , Leon Schiller

High-throughput molecular profiling technologies have produced high-dimensional multi-omics data, enabling systematic understanding of living systems at the genome scale. Studying molecular interactions across different data types helps…

Machine Learning · Computer Science 2020-10-23 Ehsan Hajiramezanali , Arman Hasanzadeh , Nick Duffield , Krishna R Narayanan , Xiaoning Qian

Virtual screening can accelerate drug discovery by identifying promising candidates for experimental evaluation. Machine learning is a powerful method for screening, as it can learn complex structure-property relationships from experimental…

Machine Learning · Computer Science 2021-02-22 Simon Axelrod , Rafael Gomez-Bombarelli

Simulating the dynamics of ions near polarizable nanoparticles (NPs) using coarse-grained models is extremely challenging due to the need to solve the Poisson equation at every simulation timestep. Recently, a molecular dynamics (MD) method…

Computational Physics · Physics 2019-11-01 JCS Kadupitiya , Geoffrey C. Fox , Vikram Jadhao