Related papers: Computing all minimal Markov bases in Macaulay2
We describe the main functions of the Macaulay2 package Quasidegrees. The purpose of this package is to compute the quasidegree set of a finitely generated A-graded module presented as the cokernel of a monomial matrix. We provide examples…
In this article we show how to compute a matrix representation and the implicit equation by means of the method developed in [Botbol: arXiv:1007.3437], using the computer algebra system Macaulay2 \cite{M2}. As it is probably the most…
The methodology of Markov basis initiated by Diaconis and Sturmfels(1998) stimulated active research on Markov bases for more than ten years. It also motivated improvements of algorithms for Grobner basis computation for toric ideals, such…
This note introduces the Macaulay2 package SchurVeronese, which gathers together data about Veronese syzygies and makes it readily accessible in Macaulay2. In addition to standard Betti tables, the package includes information about the…
This note describes a package for computing seminormalization of rings within Macaulay2.
We find all smooth toric bases that support elliptically fibered Calabi-Yau threefolds, using the intersection structure of the irreducible effective divisors on the base. These bases can be used for F-theory constructions of…
Each linear code can be described by a code ideal given as the sum of a toric ideal and a non-prime ideal. In this way, several concepts from the theory of toric ideals can be translated into the setting of code ideals. It will be shown…
Every normal toric ideal of codimension two is minimally generated by a Grobner basis with squarefree initial monomials. A polynomial time algorithm is presented for checking whether a toric ideal of fixed codimension is normal.
In this paper, we introduce the fundamental notion of a Markov basis, which is one of the first connections between commutative algebra and statistics. The notion of a Markov basis is first introduced by Diaconis and Sturmfels (1998) for…
Minimal Markov bases of configurations of integer vectors correspond to minimal binomial generating sets of the assocciated lattice ideal. We give necessary and sufficient conditions for the elements of a minimal Markov basis to be (a)…
Let $G$ be a simple graph on the vertex set $\{1,\ldots,n\}$ with $m$ edges. An algebraic object attached to $G$ is the ideal $P_{G}$ generated by diagonal 2-minors of an $n \times n$ matrix of variables. In this paper we prove that if $G$…
To any toric ideal $I_A$, encoded by an integer matrix $A$, we associate a matroid structure called {\em the bouquet graph} of $A$ and introduce another toric ideal called {\em the bouquet ideal} of $A$. We show how these objects capture…
The MultiplicitySequence package for Macaulay2 computes the multiplicity sequence of a graded ideal in a standard graded ring over a field, as well as several invariants of monomial ideals related to integral dependence. We discuss two…
We introduce the Macaulay2 package BooleanGB, which computes a Gr\"obner basis for Boolean polynomials using a binary representation rather than symbolic. We compare the runtime of several Boolean models from systems in biology and give an…
We describe our package PALP of C programs for calculations with lattice polytopes and applications to toric geometry, which is freely available on the internet. It contains routines for vertex and facet enumeration, computation of…
In this paper we present an algorithm for computing all algebraic intermediate subfields in a separably generated unirational field extension (which in particular includes the zero characteristic case). One of the main tools is Groebner…
This is an expository version of our paper [arXiv:1902.07384]. Our aim is to present recent Macaulay2 algorithms for computation of mixed multiplicities of ideals in a Noetherian ring which is either local or a standard graded algebra over…
We study the problem when an ideal generated by adjacent 2-minors is the toric ideal of a finite graph.
We describe the package "IncidenceCorrespondenceCohomology" for the computer algebra system Macaulay2. The main feature concerns the computation of characters and dimensions for the cohomology groups of line bundles on the incidence…
Relying on the combinatorial classification of toric ideals using their bouquet structure, we focus on toric ideals of hypergraphs and study how they relate to general toric ideals. We show that hypergraphs exhibit a surprisingly general…