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In this paper, three multiscale methods for coupling of mesoscopic (compartment-based) and microscopic (molecular-based) stochastic reaction-diffusion simulations are investigated. Two of the three methods that will be discussed in detail…

Subcellular Processes · Quantitative Biology 2013-04-30 Mark B Flegg , Stefan Hellander , Radek Erban

The coupled cluster method (CCM) has previously been applied to study the ground- and excited-state properties of many different types of frustrated and unfrustrated quantum spin systems. A common feature in the application of the CCM is to…

Strongly Correlated Electrons · Physics 2014-02-20 Damian J. J. Farnell , Andrew I. Croudace

A parallel numerical simulation algorithm is presented for fractional-order systems involving Caputo-type derivatives, based on the Adams-Bashforth-Moulton (ABM) predictor-corrector scheme. The parallel algorithm is implemented using…

Mathematical Software · Computer Science 2017-10-04 Cosmin Bonchis , Eva Kaslik , Florin Rosu

We report on the first results for the second-order perturbation theory correction to the ground-state energy of a nuclear many-body system in a continuum quantum Monte Carlo calculation. Second-order (and higher) perturbative corrections…

Nuclear Theory · Physics 2023-11-10 Ryan Curry , Joel E. Lynn , Kevin E. Schmidt , Alexandros Gezerlis

We propose and use a novel, hybrid Monte Carlo algorithm that combines configurational bias particle swaps with parallel tempering. We use this new method to simulate a standard model of a glass forming binary mixture above and below the…

Soft Condensed Matter · Physics 2009-11-11 Elijah Flenner , Grzegorz Szamel

The field of additive manufacturing (AM) has advanced considerably over recent decades through the development of novel methods, materials, and systems. However, as the field approaches maturity, it is relevant to investigate the scaling…

Materials Science · Physics 2023-07-28 David M. Wirth , Chi Chung Li , Jonathan K. Pokorski , Hayden K. Taylor , Maxim Shusteff

Finding an optimal match between two different crystal structures underpins many important materials science problems, including describing solid-solid phase transitions, developing models for interface and grain boundary structures. In…

Materials Science · Physics 2020-02-21 Félix Therrien , Peter Graf , Vladan Stevanović

We present optimized implementations of the weak-coupling continuous-time Monte Carlo method defined for nonequilibrium problems on the Keldysh contour. We describe and compare two methods of preparing the system before beginning the…

Strongly Correlated Electrons · Physics 2010-01-14 Philipp Werner , Takashi Oka , Martin Eckstein , Andrew J. Millis

A binary liquid near its consolute point exhibits critical fluctuations of the local composition; the diverging correlation length has always challenged simulations. The method of choice for the calculation of critical points in the phase…

Statistical Mechanics · Physics 2021-04-29 Yogyata Pathania , Dipanjan Chakraborty , Felix Höfling

Currently, identification of crystallization pathways in polymers is being carried out using molecular simulation-based data on a preset cut-off point on a single order parameter (OP) to define nucleated or crystallized regions. Aside from…

Computational Physics · Physics 2025-07-25 Elyar Tourani , Brian J. Edwards , Bamin Khomami

We propose and analyze a goal-oriented a posteriori error estimator for the atomistic-continuum modeling error in the quasicontinuum method. Based on this error estimator, we develop an algorithm which adaptively determines the atomistic…

Numerical Analysis · Mathematics 2007-05-23 Marcel Arndt , Mitchell Luskin

Bayesian Optimization is a useful tool for experiment design. Unfortunately, the classical, sequential setting of Bayesian Optimization does not translate well into laboratory experiments, for instance battery design, where measurements may…

Machine Learning · Computer Science 2023-02-24 Jose Pablo Folch , Robert M Lee , Behrang Shafei , David Walz , Calvin Tsay , Mark van der Wilk , Ruth Misener

A study for checking validity of the auxiliary field method (AFM) is made in quantum mechanical four-fermi models which act as a prototype of models for chiral symmetry breaking in Quantum Electrodynamics. It has been shown that AFM,…

High Energy Physics - Theory · Physics 2009-11-11 Taro Kashiwa , Tomohiko Sakaguchi

The rapid growth of circuit complexity has rendered Model Order Reduction (MOR) a key enabler for the efficient simulation of large circuit models. MOR techniques based on moment-matching are well established due to their simplicity and…

Other Computer Science · Computer Science 2022-04-07 Pavlos Stoikos , Dimitrios Garyfallou , George Floros , Nestor Evmorfopoulos , George Stamoulis

Crystalline materials exhibit long-range elastic fields due to the presence of defects, leading to significant domain size effects in atomistic simulations. A rigorous far-field expansion of these long-range fields identifies low-rank…

Numerical Analysis · Mathematics 2024-04-02 Julian Braun , Christoph Ortner , Yangshuai Wang , Lei Zhang

This paper explores an iterative coupling approach to solve linear thermo-poroelasticity problems, with its application as a high-fidelity discretization utilizing finite elements during the training of projection-based reduced order…

Numerical Analysis · Mathematics 2024-01-08 Francesco Ballarin , Sanghyun Lee , Son-Young Yi

The precise arrangement of microscopic objects is critical to the development of functional materials and ornately patterned surfaces. Here, we present an acoustics-based method for the rapid arrangement of microscopic particles into…

Soft Condensed Matter · Physics 2016-02-10 Crystal E. Owens , C. Wyatt Shields , Daniela F. Cruz , Patrick Charbonneau , Gabriel P. Lopez

Recent developments of high-order CCM have been to extend existing formalism and codes to $s \ge \frac 12$ for both the ground and excited states, and independently to "generalised" expectation values for a wide range of one- and two-body…

Strongly Correlated Electrons · Physics 2010-02-24 D. J. J. Farnell

The complexity of the standard hierarchy of quantum chemistry methods is not invariant to the choice of representation. This work explores how the scaling of common quantum chemistry methods can be reduced using real-space, momentum-space,…

Chemical Physics · Physics 2018-02-14 Narbe Mardirossian , James D. McClain , Garnet Kin-Lic Chan

Comparisons of higher-order predictions within the Standard Model of Particle Physics (SM) to data are central to high-energy collider experiments like the Large Hadron Collider (LHC). Processes with multiple kinematic scales, such as…

High Energy Physics - Phenomenology · Physics 2024-05-03 Rene Poncelet
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