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The problem of inferring unknown graph edges from numerical data at a graph's nodes appears in many forms across machine learning. We study a version of this problem that arises in the field of \emph{landscape genetics}, where genetic…

Machine Learning · Computer Science 2021-03-11 Prathamesh Dharangutte , Christopher Musco

In this paper, we consider the problem of reconstructing a directed graph using path queries. In this query model of learning, a graph is hidden from the learner, and the learner can access information about it with path queries. For a…

Data Structures and Algorithms · Computer Science 2021-03-17 Mano Vikash Janardhanan , Lev Reyzin

Determining whether two graphs are structurally identical is a fundamental problem with applications spanning mathematics, computer science, chemistry, and network science. Despite decades of study, graph isomorphism remains a challenging…

Computational Physics · Physics 2026-04-10 Sara Najem , Amer E. Mouawad

How to properly model graphs is a long-existing and important problem in NLP area, where several popular types of graphs are knowledge graphs, semantic graphs and dependency graphs. Comparing with other data structures, such as sequences…

Computation and Language · Computer Science 2019-07-16 Linfeng Song

Graph processes exhibit a temporal structure determined by the sequence index and and a spatial structure determined by the graph support. To learn from graph processes, an information processing architecture must then be able to exploit…

Signal Processing · Electrical Eng. & Systems 2020-12-02 Luana Ruiz , Fernando Gama , Alejandro Ribeiro

Message passing graph neural networks (GNNs) are a popular learning architectures for graph-structured data. However, one problem GNNs experience is oversquashing, where a GNN has difficulty sending information between distant nodes.…

Machine Learning · Computer Science 2023-06-07 Mitchell Black , Zhengchao Wan , Amir Nayyeri , Yusu Wang

Graph connectivity is a fundamental combinatorial optimization problem that arises in many practical applications, where usually a spanning subgraph of a network is used for its operation. However, in the real world, links may fail…

Data Structures and Algorithms · Computer Science 2022-09-13 Dimitris Fotakis , Evangelia Gergatsouli , Charilaos Pipis , Miltiadis Stouras , Christos Tzamos

Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…

Data Structures and Algorithms · Computer Science 2021-08-10 Cheng Mao , Mark Rudelson , Konstantin Tikhomirov

We study the problem of inferring network topology from information cascades, in which the amount of time taken for information to diffuse across an edge in the network follows an unknown distribution. Unlike previous studies, which assume…

Social and Information Networks · Computer Science 2019-03-05 Feng Ji , Wenchang Tang , Wee Peng Tay , Edwin K. P. Chong

This paper presents an introduction and expository account of a beautiful, current, and active application of recursions to the computation of resistance distance. Resistance distance, also referred to as effective resistance, is a…

History and Overview · Mathematics 2025-06-17 Emily J. Evans , Russell Jay Hendel

Edge-labeled graphs are widely used to describe relationships between entities in a database. Given a query subgraph that represents an example of what the user is searching for, we study the problem of efficiently searching for similar…

Databases · Computer Science 2020-05-12 Zhaoyang Shao , Davood Rafiei , Themis Palpanas

We study the query complexity of determining if a graph is connected with global queries. The first model we look at is matrix-vector multiplication queries to the adjacency matrix. Here, for an $n$-vertex graph with adjacency matrix $A$,…

Data Structures and Algorithms · Computer Science 2021-09-07 Arinta Auza , Troy Lee

Graph anomaly detection faces significant challenges due to the scarcity of reliable anomaly-labeled datasets, driving the development of unsupervised methods. Graph autoencoders (GAEs) have emerged as a dominant approach by reconstructing…

Machine Learning · Computer Science 2025-06-03 Chunyu Wei , Wenji Hu , Xingjia Hao , Yunhai Wang , Yueguo Chen , Bing Bai , Fei Wang

Recursive graph queries are increasingly popular for extracting information from interconnected data found in various domains such as social networks, life sciences, and business analytics. Graph data often come with schema information that…

Databases · Computer Science 2025-02-13 Chandan Sharma , Pierre Genevès , Nils Gesbert , Nabil Layaïda

Network inference is the process of deciding what is the true unknown graph underlying a set of interactions between nodes. There is a vast literature on the subject, but most known methods have an important drawback: the inferred graph is…

Social and Information Networks · Computer Science 2023-02-03 Effrosyni Papanastasiou , Anastasios Giovanidis

In the Network Inference problem, one seeks to recover the edges of an unknown graph from the observations of cascades propagating over this graph. In this paper, we approach this problem from the sparse recovery perspective. We introduce a…

Social and Information Networks · Computer Science 2024-11-14 Jean Pouget-Abadie , Thibaut Horel

Graph embeddings have emerged as a powerful tool for representing complex network structures in a low-dimensional space, enabling the use of efficient methods that employ the metric structure in the embedding space as a proxy for the…

Social and Information Networks · Computer Science 2024-04-18 Radosław Nowak , Adam Małkowski , Daniel Cieślak , Piotr Sokół , Paweł Wawrzyński

We address the problem of identifying a graph structure from the observation of signals defined on its nodes. Fundamentally, the unknown graph encodes direct relationships between signal elements, which we aim to recover from observable…

Social and Information Networks · Computer Science 2016-08-11 Santiago Segarra , Antonio G. Marques , Gonzalo Mateos , Alejandro Ribeiro

Document structure analysis, such as zone segmentation and table recognition, is a complex problem in document processing and is an active area of research. The recent success of deep learning in solving various computer vision and machine…

Computer Vision and Pattern Recognition · Computer Science 2019-07-04 Shah Rukh Qasim , Hassan Mahmood , Faisal Shafait

The mining of frequent subgraphs from labeled graph data has been studied extensively. Furthermore, much attention has recently been paid to frequent pattern mining from graph sequences. A method, called GTRACE, has been proposed to mine…

Databases · Computer Science 2015-05-30 Akihiro Inokuchi , Hiroaki Ikuta , Takashi Washio