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Labelling data is expensive and time consuming especially for domains such as medical imaging that contain volumetric imaging data and require expert knowledge. Exploiting a larger pool of labeled data available across multiple centers,…

Computer Vision and Pattern Recognition · Computer Science 2020-09-03 Daiqing Li , Amlan Kar , Nishant Ravikumar , Alejandro F Frangi , Sanja Fidler

Simulating physical systems is a core component of scientific computing, encompassing a wide range of physical domains and applications. Recently, there has been a surge in data-driven methods to complement traditional numerical simulations…

Machine Learning · Computer Science 2021-08-19 Karl Otness , Arvi Gjoka , Joan Bruna , Daniele Panozzo , Benjamin Peherstorfer , Teseo Schneider , Denis Zorin

We present an open-source software for the simulation of observables in magnetic resonance experiments, including nuclear magnetic/quadrupole resonance NMR/NQR and electron spin resonance (ESR), developed to assist experimental research in…

Simulations with high accuracy are an essential part of scientific research to accelerate the innovation process. They are especially useful for finding novel approaches or optimizing existing methods. Today, powerful software tools are…

Medical Physics · Physics 2022-08-31 Patrick Vogel , Martin A. Rückert , Thomas Kampf , Volker C. Behr

Non-Gaussian spatial and spatio-temporal data are becoming increasingly prevalent, and their analysis is needed in a variety of disciplines. FRK is an R package for spatial/spatio-temporal modelling and prediction with very large data sets…

Computation · Statistics 2022-11-22 Matthew Sainsbury-Dale , Andrew Zammit-Mangion , Noel Cressie

The procedure for simulating the nuclear magnetic resonance spectrum linked to the spin system of a molecule for a certain nucleus entails diagonalizing the associated Hamiltonian matrix. As the dimensions of said matrix grow exponentially…

Quantum Physics · Physics 2024-10-29 Joaquín Ossorio-Castillo , Alexandre Rodríguez-Coello

We introduce QCLAB, an object-oriented MATLAB toolbox for constructing, representing, and simulating quantum circuits. Designed with an emphasis on numerical stability, efficiency, and performance, QCLAB provides a reliable platform for…

Quantum Physics · Physics 2025-03-06 Sophia Keip , Daan Camps , Roel Van Beeumen

This paper introduces a shoebox room simulator able to systematically generate synthetic datasets of binaural room impulse responses (BRIRs) given an arbitrary set of head-related transfer functions (HRTFs). The evaluation of machine…

Sound · Computer Science 2021-06-25 Roberto Barumerli , Daniele Bianchi , Michele Geronazzo , Federico Avanzini

In the event-related functional magnetic resonance imaging (fMRI) data analysis, there is an extensive interest in accurately and robustly estimating the hemodynamic response function (HRF) and its associated statistics (e.g., the magnitude…

Applications · Statistics 2013-12-23 Jiaping Wang , Hongtu Zhu , Jianqing Fan , Kelly Giovanello , Weili Lin

We present mrfmsim, an open-source Python package that facilitates the design, simulation, and analysis of magnetic resonance force microscopy (MRFM) experiments. MRFM is a scanning-probe technique that detects magnetic resonance from…

Computational Physics · Physics 2026-03-03 Peter Sun , Corinne E. Isaac , Michael C. Boucher , Eric W. Moore , Zhen Wang , John A. Marohn

In Magnetic Resonance Imaging (MRI) data samples are collected in the spatial frequency domain (k-space), typically by time-consuming line-by-line scanning on a Cartesian grid. Scans can be accelerated by simultaneous acquisition of data…

Medical Physics · Physics 2015-03-24 Vivek Athalye , Michael Lustig , Martin Uecker

Magnetic Resonance Imaging (MRI) scans are time consuming and precarious, since the patients remain still in a confined space for extended periods of time. To reduce scanning time, some experts have experimented with undersampled k spaces,…

Image and Video Processing · Electrical Eng. & Systems 2022-08-25 Kyler Larsen , Arghya Pal , Yogesh Rathi

We present the details of a simulation suite for modeling the effects of readout with SLAC Microresonator RF (SMuRF) electronics. The SMuRF electronics are a warm readout and control system for use with superconducting microwave…

Instrumentation and Methods for Astrophysics · Physics 2022-08-04 Cyndia Yu , Zeeshan Ahmed , J. Mitch D'Ewart , Josef C. Frisch , Shawn W. Henderson , Max Silva-Feaver

We describe a new software package for simulating channelised, high-time resolution data streams from radio telescopes. The software simulates data from the telescope and observing system taking into account the observation strategy,…

Instrumentation and Methods for Astrophysics · Physics 2022-05-09 Rui Luo , George Hobbs , Suk Yee Yong , Andrew Zic , Lawrence Toomey , Shi Dai , Alex Dunning , Di Li , Tommy Marshman , Chen Wang , Pei Wang , Shuangqiang Wang , Songbo Zhang

Interferometric scattering microscopy is a powerful technique that enables various applications, such as mass photometry and particle tracking. Here we present a numerical toolbox to simulate images obtained in interferometric scattering,…

Computational ultrasound imaging has become a well-established methodology in the ultrasound community. In the accompanying paper (part I), we described a new ultrasound simulator (SIMUS) for Matlab, which belongs to the Matlab UltraSound…

Medical Physics · Physics 2022-04-06 Amanda Cigier , François Varray , Damien Garcia

FRK is an R software package for spatial/spatio-temporal modelling and prediction with large datasets. It facilitates optimal spatial prediction (kriging) on the most commonly used manifolds (in Euclidean space and on the surface of the…

Computation · Statistics 2018-06-11 Andrew Zammit-Mangion , Noel Cressie

This study presents an integrated approach for advancing functional Near-Infrared Spectroscopy (fNIRS) neuroimaging through the synthesis of data and application of machine learning models. By addressing the scarcity of high-quality…

Signal Processing · Electrical Eng. & Systems 2024-05-21 Eitan Waks

This work presents a first-of-its-kind graphical user interface (GUI)-based simulator developed using MATLAB App designer for the comprehensive analysis of sparse linear arrays (SLAs) in the difference coarray (DCA) domain. Sparse sensor…

Signal Processing · Electrical Eng. & Systems 2026-04-28 Ashish Patwari , Ananya Pandey , Aditya Dabade , Priyadarshini Raiguru

Forthcoming cosmic microwave background (CMB) polarized anisotropy experiments have the potential to revolutionize our understanding of the Universe and fundamental physics. The sought-after, tale-telling signatures will be however…

Cosmology and Nongalactic Astrophysics · Physics 2022-05-12 Hamza El Bouhargani , Aygul Jamal , Dominic Beck , Josquin Errard , Laura Grigori , Radek Stompor