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Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…

Populations and Evolution · Quantitative Biology 2019-11-28 Mareike Fischer , Michelle Galla , Lina Herbst , Yangjing Long , Kristina Wicke

We consider infinite weighted graphs $G$, i.e., sets of vertices $V$, and edges $E$ assumed countable infinite. An assignment of weights is a positive symmetric function $c$ on $E$ (the edge-set), conductance. From this, one naturally…

Functional Analysis · Mathematics 2015-02-25 Palle Jorgensen , Feng Tian

Heteroclinic connections are trajectories that link invariant sets for an autonomous dynamical flow: these connections can robustly form networks between equilibria, for systems with flow-invariant spaces. In this paper we examine the…

Dynamical Systems · Mathematics 2019-09-04 Peter Ashwin , Sofia Castro , Alexander Lohse

A new family of graphs, {\it entangled networks}, with optimal properties in many respects, is introduced. By definition, their topology is such that optimizes synchronizability for many dynamical processes. These networks are shown to have…

Statistical Mechanics · Physics 2009-11-11 Luca Donetti , Pablo I. Hurtado , Miguel A. Munoz

Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set $X$ of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate…

Combinatorics · Mathematics 2021-01-01 Peter L. Erdos , Charles Semple , Mike Steel

Given a connected locally finite simplicial graph $ G$ with vertex set $V$, the combinatorial Laplacian $\Delta_G \colon \R^V \to \R^V$ is defined on the space of all real-valued functions on $V$. We prove that $\Delta_G$ is surjective if…

Analysis of PDEs · Mathematics 2012-09-25 Tullio Ceccherini-Silberstein , Michel Coornaert , Jozef Dodziuk

The notion of network connectivity is used to characterize the robustness and failure tolerance of networks, with high connectivity being a desirable feature. In this paper, we develop a novel approach to the problem of identifying critical…

Optimization and Control · Mathematics 2019-10-29 Vishaal Krishnan , Sonia Martínez

Let $X$ be a finite set, $\mathcal N$ be a reticulation-visible network on $X$, and $\mathcal T$ be a rooted binary phylogenetic tree. We show that there is a polynomial-time algorithm for deciding whether or not $\mathcal N$ displays…

Combinatorics · Mathematics 2017-06-27 Magnus Bordewich , Charles Semple

Quantifying the relations (e.g., similarity) between complex networks paves the way for studying the latent information shared across networks. However, fundamental relation metrics are not well-defined between networks. As a compromise,…

Social and Information Networks · Computer Science 2023-07-21 Yang Tian , Hedong Hou , Guangzheng Xu , Ziyang Zhang , Pei Sun

A rooted acyclic digraph N with labelled leaves displays a tree T when there exists a way to select a unique parent of each hybrid vertex resulting in the tree T. Let Tr(N) denote the set of all trees displayed by the network N. In general,…

Populations and Evolution · Quantitative Biology 2015-01-30 Stephen J. Willson

This work analyzes Graph Neural Networks, a generalization of Fully-Connected Deep Neural Nets on Graph structured data, when their width, that is the number of nodes in each fullyconnected layer is increasing to infinity. Infinite Width…

Machine Learning · Computer Science 2023-11-21 Yunus Cobanoglu

The universal approximation theorem states that a neural network with one hidden layer can approximate continuous functions on compact sets with any desired precision. This theorem supports using neural networks for various applications,…

Machine Learning · Computer Science 2024-08-13 Marcos Eduardo Valle , Wington L. Vital , Guilherme Vieira

We call a finite undirected graph minimally k-matchable if it has at least k distinct perfect matchings but deleting any edge results in a graph which has not. An odd subdivision of some graph G is any graph obtained by replacing every edge…

Combinatorics · Mathematics 2016-08-05 Gasper Fijavz , Matthias Kriesell

We study Turing bifurcations on one-dimensional random ring networks where the probability of a connection between two nodes depends on the distance between the two nodes. Our approach uses the theory of graphons to approximate the graph…

Dynamical Systems · Mathematics 2026-03-03 Jason Bramburger , Matt Holzer

Signed graphs have appeared in a broad variety of applications, ranging from social networks to biological networks, from distributed control and computation to power systems. In this paper, we investigate spectral properties of signed…

Systems and Control · Electrical Eng. & Systems 2020-09-09 Wei Chen , Dan Wang , Ji Liu , Yongxin Chen , Sei Zhen Khong , Tamer Başar , Karl H. Johansson , Li Qiu

In this series we introduce and investigate the concept of connectoids, which captures the connectivity structure of various discrete objects like undirected graphs, directed graphs, bidirected graphs, hypergraphs or finitary matroids. In…

Combinatorics · Mathematics 2025-06-17 Nathan Bowler , Florian Reich

We consider the three-dimensional Laplacian with a magnetic field created by an infinite rectilinear current bearing a constant current. The spectrum of the associated hamiltonian is the positive half-axis as the range of an infinity of…

Analysis of PDEs · Mathematics 2014-02-20 Vincent Bruneau , Nicolas Popoff

Power grids are undergoing major changes from a few large producers to smart grids build upon renewable energies. Mathematical models for power grid dynamics have to be adapted to capture, when dynamic nodes can achieve synchronization to a…

Dynamical Systems · Mathematics 2018-07-11 Christian Kuehn , Sebastian Throm

We consider the action of the (combinatorial) Laplacian of a finite and simple graph on integer vectors. By a \emph{Laplacian monopole} we mean an image vector negative at exactly one coordinate associated with a vertex. We consider a…

Combinatorics · Mathematics 2020-06-11 Cong X. Kang , Gretchen L. Matthews , Justin D. Peachey

Training neural networks to be certifiably robust is critical to ensure their safety against adversarial attacks. However, it is currently very difficult to train a neural network that is both accurate and certifiably robust. In this work…

Machine Learning · Computer Science 2020-01-16 Maximilian Baader , Matthew Mirman , Martin Vechev
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