Related papers: Minimizers in Semi-Dynamic Strings
In this paper we present new constructive methods, random and deterministic, for the efficient subsampling of finite frames in $\mathbb C^m$. Based on a suitable random subsampling strategy, we are able to extract from any given frame with…
In today's data-centric world, fast and effective compression of data is paramount. To measure success towards the second goal, Kempa and Prezza [STOC2018] introduce the string attractor, a combinatorial object unifying dictionary-based…
The edit distance of two strings is the minimum number of insertions, deletions, and substitutions needed to transform one string into the other. The textbook algorithm determines the edit distance of length-$n$ strings in $O(n^2)$ time,…
For a stationary stochastic process $\{X_n\}$ with values in some set $A$, a finite word $w \in A^K$ is called a memory word if the conditional probability of $X_0$ given the past is constant on the cylinder set defined by $X_{-K}^{-1}=w$.…
In dynamic submodular maximization, the goal is to maintain a high-value solution over a sequence of element insertions and deletions with a fast update time. Motivated by large-scale applications and the fact that dynamic data often…
A palindromic substring $T[i.. j]$ of a string $T$ is said to be a shortest unique palindromic substring (SUPS) in $T$ for an interval $[p, q]$ if $T[i.. j]$ is a shortest palindromic substring such that $T[i.. j]$ occurs only once in $T$,…
This paper gives new results for synchronization strings, a powerful combinatorial object that allows to efficiently deal with insertions and deletions in various communication settings: $\bullet$ We give a deterministic, linear time…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
We describe the first self-indexes able to count and locate pattern occurrences in optimal time within a space bounded by the size of the most popular dictionary compressors. To achieve this result we combine several recent findings,…
This paper considers the minimization problem of relaxed submodular functions. For a positive integer $k$, a set function is called $k$-distant submodular if the submodular inequality holds for every pair whose symmetric difference is at…
Metric $k$-center clustering is a fundamental unsupervised learning primitive. Although widely used, this primitive is heavily affected by noise in the data, so that a more sensible variant seeks for the best solution that disregards a…
Matrix multiplication is a core operation in numerous applications, yet its exact computation becomes prohibitively expensive as data scales, especially in streaming environments where timeliness is critical. In many real-world scenarios,…
In this paper, we consider a generalized longest common subsequence problem, in which a constraining sequence of length $s$ must be included as a substring and the other constraining sequence of length $t$ must be excluded as a subsequence…
The sliding window model of computation captures scenarios in which data is arriving continuously, but only the latest $w$ elements should be used for analysis. The goal is to design algorithms that update the solution efficiently with each…
Strings are a natural representation of biological data such as DNA, RNA and protein sequences. The problem of finding a string that summarizes a set of sequences has direct application in relative compression algorithms for genome and…
This paper is concerned with practical implementations of approximate string dictionaries that allow edit errors. In this problem, we have as input a dictionary $D$ of $d$ strings of total length $n$ over an alphabet of size $\sigma$. Given…
We consider time-space tradeoffs for exactly computing frequency moments and order statistics over sliding windows. Given an input of length 2n-1, the task is to output the function of each window of length n, giving n outputs in total.…
Palindromes are strings that read the same forward and backward. The computation of palindromic structures within strings is a fundamental problem in string algorithms, being motivated by potential applications in formal language theory and…
We present a deterministic fully dynamic algorithm with subpolynomial worst-case time per graph update such that after processing each update of the graph, the algorithm outputs a minimum cut of the graph if the graph has a cut of size at…
We introduce a novel definition of approximate palindromes in strings, and provide an algorithm to find all maximal approximate palindromes in a string with up to $k$ errors. Our definition is based on the usual edit operations of…