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The dynamics of filaments in flow are central to understanding a wide range of biological and soft-matter systems, yet their behavior under time-dependent forcing remains poorly understood. Here, we investigate the long-time dynamics of…

Soft Condensed Matter · Physics 2026-01-05 Francesco Bonacci , Brato Chakrabarti , Olivia du Roure , Anke Lindner , David Saintillan

Biological systems are robust to perturbations at both the genetic and environmental levels. Yet, these same perturbations can elicit variation in behavior. The interplay between functional robustness and behavioral variability is…

Biological Physics · Physics 2021-06-03 Veikko Geyer , Jonathon Howard , Pablo Sartori

Many-body interactions in systems of active matter can cause particles to move collectively and self-organize into dynamic structures with long-range order. In cells, the self-assembly of cytoskeletal filaments is critical for cellular…

Soft Condensed Matter · Physics 2020-05-26 Jeffrey M. Moore , Matthew A. Glaser , Meredith D. Betterton

This work focuses on planar growth-induced instabilities in three-dimensional bilayer structures, i.e., thick stiff film on a compliant substrate. Growth-induced instabilities are examined for a different range of fiber stiffness with a…

Numerical Analysis · Mathematics 2022-08-01 Cem Altun , Ercan Gürses , Hüsnü Dal

Non-equilibrium processes which convert chemical energy into mechanical motion enable the motility of organisms. Bundles of inextensible filaments driven by energy transduction of molecular motors form essential components of micron-scale…

Soft Condensed Matter · Physics 2013-06-13 Abhrajit Laskar , Rajeev Singh , Somdeb Ghose , Gayathri Jayaraman , P. B. Sunil Kumar , R. Adhikari

The filamentation instability of counterpropagating symmetric beams of electrons is examined with 1D and 2D particle-in-cell (PIC) simulations, which are oriented orthogonally to the beam velocity vector. The beams are uniform, warm and…

Plasma Physics · Physics 2015-05-14 M E Dieckmann

By adjusting the interface energy, curvature, and velocity, the anisotropy plays an important role in the interaction between interfacial processes and transport processes, determining the solidification structures. In this paper, through…

Materials Science · Physics 2022-10-31 Fengyi Yu

The displacement of a fluid by another less viscous one in a quasi-two dimensional geometry typically leads to complex fingering patterns. In an isotropic system, dense-branching growth arises, which is characterized by repeated…

Fluid Dynamics · Physics 2021-01-19 Qing Zhang , Amin Amooie , Martin Z. Bazant , Irmgard Bischofberger

The bending of cilia and flagella is driven by forces generated by dynein motor proteins. These forces slide adjacent microtubule doublets within the axoneme, the motile cytoskeletal structure. To create regular, oscilla- tory beating…

Biological Physics · Physics 2015-06-19 V. Mukundan , P. Sartori , V. F. Geyer , F. Julicher , J. Howard

This work investigates wave propagation in undulated square structural lattices. The undulated pattern is obtained by imposing an initial curvature to the lattice's elements. The study considers both periodic undulated structures, in which…

Materials Science · Physics 2015-12-02 Giuseppe Trainiti , Julian J. Rimoli , Massimo Ruzzene

Cilia are ubiquitous organelles involves in eukaryotic motility. They are long, slender, and motile protrusions from the cell body. They undergo active regular oscillatory beating patterns that can propel cells, such as the algae…

Subcellular Processes · Quantitative Biology 2019-05-13 Pablo Sartori

Motivated to understand the behavior of biological filaments interacting with membranes of various types, we study a theoretical model for the shape and thermodynamics of intrinsically-helical filaments bound to curved membranes. We show…

Soft Condensed Matter · Physics 2016-11-03 D. A. Quint , A. Gopinathan , G. M. Grason

Spontaneous material shape changes, such as swelling, growth or thermal expansion, can be used to trigger dramatic elastic instabilities in thin shells. These instabilities originate in geometric incompatibility between the preferred…

Soft Condensed Matter · Physics 2022-04-18 Andrea Giudici , John S. Biggins

Symmetry is closely intertwined with the function, genetics, and chemical properties of multiprotein complexes. Here, we explore the relation between structural symmetry and the ability of membrane proteins to sense and induce membrane…

Biological Physics · Physics 2018-10-19 Federico Elías-Wolff , Alexander Lyubartsev , Erik G. Brandt , Martin Lindén

The present work is devoted to the phenomenon of induced side branching stemming from the disruption of free dendrite growth. Therein, we postulate that the secondary branching instability can be triggered by the departure of the morphology…

Pattern Formation and Solitons · Physics 2022-01-12 Gilles Demange , Renaud Patte , Helena Zapolsky

Propelling microorganisms through fluids and moving fluids along cellular surfaces are essential biological functions accomplished by long, thin structures called motile cilia and flagella, whose regular, oscillatory beating breaks the…

The loading of a granular material induces anisotropies of the particle arrangement (fabric) and of the material's strength, incremental stiffness, and permeability. Thirteen measures of fabric anisotropy are developed, which are arranged…

Soft Condensed Matter · Physics 2018-12-21 Matthew R. Kuhn , WaiChing Sun , Qi Wang

We describe simulations of a microscopic elastic filament immersed in a fluid and subject to a uniform external force. Our method accounts for the hydrodynamic coupling between the flow generated by the filament and the friction force it…

Soft Condensed Matter · Physics 2009-11-11 M. Cosentino Lagomarsino , I. Pagonabarraga , C. P. Lowe

We demonstrate that internal pivot-like defects, arising from rigor mutant motor proteins that bind without stepping, fundamentally reshape the dynamics of semiflexible filaments in two-dimensional motility assays. Using large-scale…

Biological Physics · Physics 2025-09-29 Sandip Roy , Debasish Chaudhuri , Abhishek Chaudhuri

Active filaments, such as microtubules with attached cargo-carrying motor proteins, are important dynamic structures for fluid transport in and around living cells. The mathematical models of active filaments appearing in the literature…

Fluid Dynamics · Physics 2025-08-19 Ilteber R. Ozdemir , Bethany Clarke , Yongyun Hwang , Eric E. Keaveny