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As single-cell gene expression data analysis continues to grow, the need for reliable clustering methods has become increasingly important. The prevalence of heuristic means for method choice could lead to inaccurate reports if…

Quantitative Methods · Quantitative Biology 2026-05-19 Owen Visser , Somnath Datta

Quality assessments of models in unsupervised learning and clustering verification in particular have been a long-standing problem in the machine learning research. The lack of robust and universally applicable cluster validity scores often…

Machine Learning · Statistics 2018-03-30 Luzie Helfmann , Johannes von Lindheim , Mattes Mollenhauer , Ralf Banisch

Clustering algorithms have long been the topic of research, representing the more popular side of unsupervised learning. Since clustering analysis is one of the best ways to find some clarity and structure within raw data, this paper…

Machine Learning · Computer Science 2025-11-25 Naitik Gada

Spectral clustering is one of the most prominent clustering approaches. The distance-based similarity is the most widely used method for spectral clustering. However, people have already noticed that this is not suitable for multi-scale…

Machine Learning · Computer Science 2020-09-11 Hengrui Wang , Yubo Zhang , Mingzhi Chen , Tong Yang

We propose a new clustering technique that can be regarded as a numerical method to compute the proximity gestalt. The method analyzes edge length statistics in the MST of the dataset and provides an a contrario cluster detection criterion.…

Machine Learning · Computer Science 2011-07-20 Mariano Tepper , Pablo Musé , Andrés Almansa

Unsupervised clustering algorithms for vectors has been widely used in the area of machine learning. Many applications, including the biological data we studied in this paper, contain some boundary datapoints which show combination…

Machine Learning · Computer Science 2022-05-23 Yingcong Li , Chandra Sekhar Mukherjee , Jiapeng Zhang

The increasing pervasiveness of social media creates new opportunities to study human social behavior, while challenging our capability to analyze their massive data streams. One of the emerging tasks is to distinguish between different…

Social and Information Networks · Computer Science 2017-03-07 Emilio Ferrara , Mohsen JafariAsbagh , Onur Varol , Vahed Qazvinian , Filippo Menczer , Alessandro Flammini

Research on cluster analysis for categorical data continues to develop, with new clustering algorithms being proposed. However, in this context, the determination of the number of clusters is rarely addressed. In this paper, we propose a…

Methodology · Statistics 2014-09-29 Cláudia Silvestre , Margarida G. M. S. Cardoso , Mário A. T. Figueiredo

In an age of increasingly large data sets, investigators in many different disciplines have turned to clustering as a tool for data analysis and exploration. Existing clustering methods, however, typically depend on several nontrivial…

Quantitative Methods · Quantitative Biology 2009-11-11 Noam Slonim , Gurinder Singh Atwal , Gasper Tkacik , William Bialek

Networks often exhibit structure at disparate scales. We propose a method for identifying community structure at different scales based on multiresolution modularity and consensus clustering. Our contribution consists of two parts. First,…

Social and Information Networks · Computer Science 2018-02-01 Lucas G. S. Jeub , Olaf Sporns , Santo Fortunato

This paper proposes an early detection method for cluster structural changes. Cluster structure refers to discrete structural characteristics, such as the number of clusters, when data are represented using finite mixture models, such as…

Machine Learning · Statistics 2024-03-28 Kento Urano , Ryo Yuki , Kenji Yamanishi

This paper is a comparison study in the context of Topic Detection on COVID-19 data. There are various approaches for Topic Detection, among which the Clustering approach is selected in this paper. Clustering requires distance and…

Computation and Language · Computer Science 2021-11-17 Elnaz Zafarani-Moattar , Mohammad Reza Kangavari , Amir Masoud Rahmani

This paper is a chapter in the forthcoming Handbook of Cluster Analysis, Hennig et al. (2015). For definitions of basic clustering methods and some further methodology, other chapters of the Handbook are referred to. To read this version of…

Methodology · Statistics 2015-03-09 Christian Hennig

We study the problem of explainability-first clustering where explainability becomes a first-class citizen for clustering. Previous clustering approaches use decision trees for explanation, but only after the clustering is completed. In…

Machine Learning · Computer Science 2022-12-13 Hyunseung Hwang , Steven Euijong Whang

Currently, data-driven discovery in biological sciences resides in finding segmentation strategies in multivariate data that produce sensible descriptions of the data. Clustering is but one of several approaches and sometimes falls short…

Quantitative Methods · Quantitative Biology 2022-08-12 Richard Tjörnhammar

Comparing clusterings is central to evaluating unsupervised models, yet the many existing similarity measures can produce widely divergent, sometimes contradictory, evaluations. Clustering similarity measures are typically organized into…

Machine Learning · Statistics 2025-11-06 Alexander J. Gates

There are various cluster validity indices used for evaluating clustering results. One of the main objectives of using these indices is to seek the optimal unknown number of clusters. Some indices work well for clusters with different…

Machine Learning · Statistics 2024-01-09 Nathakhun Wiroonsri

A novel nonparametric clustering algorithm is proposed using the interpoint distances between the members of the data to reveal the inherent clustering structure existing in the given set of data, where we apply the classical nonparametric…

Methodology · Statistics 2024-09-02 Soumita Modak

Clustering methods are popular for revealing structure in data, particularly in the high-dimensional setting common to contemporary data science. A central statistical question is, "are the clusters really there?" One pioneering method in…

Methodology · Statistics 2023-08-28 Thomas H. Keefe , J. S. Marron

Fair clustering is the process of grouping similar entities together, while satisfying a mathematically well-defined fairness metric as a constraint. Due to the practical challenges in precise model specification, the prescribed fairness…

Machine Learning · Statistics 2021-02-09 Sainyam Galhotra , Sandhya Saisubramanian , Shlomo Zilberstein