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The scientific literature is growing faster than ever. Finding an expert in a particular scientific domain has never been as hard as today because of the increasing amount of publications and because of the ever growing diversity of…

Information Retrieval · Computer Science 2020-04-09 Robin Brochier , Antoine Gourru , Adrien Guille , Julien Velcin

Machine Learning (ML) has garnered considerable attention from researchers and practitioners as a new and adaptable tool for disease diagnosis. With the advancement of ML and the proliferation of papers and research in this field, a…

Machine Learning · Computer Science 2022-01-11 Md Manjurul Ahsan , Zahed Siddique

We present a scalable, AI-powered system that identifies and extracts evidence-based behavioral nudges from unstructured biomedical literature. Nudges are subtle, non-coercive interventions that influence behavior without limiting choice,…

Reproducibility is essential to reliable scientific discovery in high-throughput experiments. In this work we propose a unified approach to measure the reproducibility of findings identified from replicate experiments and identify putative…

Applications · Statistics 2011-10-24 Qunhua Li , James B. Brown , Haiyan Huang , Peter J. Bickel

This paper proposes a procedure to execute external source codes from a LaTeX document and include the calculation outputs in the resulting Portable Document Format (pdf) file automatically. It integrates programming tools into the LaTeX…

Software Engineering · Computer Science 2021-06-29 Haim Bar , HaiYing Wang

Modern scientific discovery faces growing challenges in integrating vast and heterogeneous knowledge critical to breakthroughs in biomedicine and drug development. Traditional hypothesis-driven research, though effective, is constrained by…

Human-Computer Interaction · Computer Science 2025-07-24 Haoran Jiang , Shaohan Shi , Yunjie Yao , Chang Jiang , Quan Li

Reproducing research results in the networking community is important for both academia and industry. The current best practice typically resorts to three approaches: (1) looking for publicly available prototypes; (2) contacting the authors…

Machine Learning · Computer Science 2023-09-12 Qiao Xiang , Yuling Lin , Mingjun Fang , Bang Huang , Siyong Huang , Ridi Wen , Franck Le , Linghe Kong , Jiwu Shu

The vast amount of biomedical information available today presents a significant challenge for investigators seeking to digest, process, and understand these findings effectively. Large Language Models (LLMs) have emerged as powerful tools…

Computation and Language · Computer Science 2024-07-19 Alexander R. Pelletier , Joseph Ramirez , Irsyad Adam , Simha Sankar , Yu Yan , Ding Wang , Dylan Steinecke , Wei Wang , Peipei Ping

Scientific writing builds upon already published papers. Manual identification of publications to read, cite or consider as related papers relies on a researcher's ability to identify fitting keywords or initial papers from which a…

Digital Libraries · Computer Science 2022-09-08 Christin Katharina Kreutz , Ralf Schenkel

Significant scientific discoveries have driven the progress of human civilisation. The explosion of scientific literature and data has created information barriers across disciplines that have slowed the pace of scientific discovery. Large…

Computation and Language · Computer Science 2023-11-13 Biqing Qi , Kaiyan Zhang , Haoxiang Li , Kai Tian , Sihang Zeng , Zhang-Ren Chen , Bowen Zhou

Large language models (LLMs) achieve strong performance but remain costly to deploy in resource-constrained settings. Training small language models (SLMs) from scratch is computationally expensive, while conventional knowledge distillation…

Computation and Language · Computer Science 2026-05-11 Boyu Shi , YiCheng Jiang , Chang Liu , Qiufeng Wang , Xu Yang , Xin Geng

One of the most reliable ways to create deployable models for specialized tasks is to obtain an adequate amount of high-quality task-specific data. However, for specialized tasks, often such datasets do not exist. Existing methods address…

Computation and Language · Computer Science 2024-07-09 Jiaxin Ge , Xueying Jia , Vijay Viswanathan , Hongyin Luo , Graham Neubig

Isolated silos of scientific research and the growing challenge of information overload limit awareness across the literature and hinder innovation. Algorithmic curation and recommendation, which often prioritize relevance, can further…

Digital Libraries · Computer Science 2022-02-01 Jason Portenoy , Marissa Radensky , Jevin West , Eric Horvitz , Daniel Weld , Tom Hope

Against the background of what has been termed a reproducibility crisis in science, the NLP field is becoming increasingly interested in, and conscientious about, the reproducibility of its results. The past few years have seen an…

Computation and Language · Computer Science 2021-03-23 Anya Belz , Shubham Agarwal , Anastasia Shimorina , Ehud Reiter

Assessing ways in which Language Models can reduce their hallucinations and improve the outputs' quality is crucial to ensure their large-scale use. However, methods such as fine-tuning on domain-specific data or the training of a separate…

Computation and Language · Computer Science 2026-01-29 Sara Candussio

Discovering novel concepts in unlabelled datasets and in a continuous manner is an important desideratum of lifelong learners. In the literature such problems have been partially addressed under very restricted settings, where novel classes…

Computer Vision and Pattern Recognition · Computer Science 2024-08-26 Mingxuan Liu , Subhankar Roy , Zhun Zhong , Nicu Sebe , Elisa Ricci

Large Language Models (LLMs) are now widely used for query reformulation and expansion in Information Retrieval, with many studies reporting substantial effectiveness gains. However, these results are typically obtained under heterogeneous…

Information Retrieval · Computer Science 2026-05-01 Amin Bigdeli , Radin Hamidi Rad , Hai Son Le , Mert Incesu , Negar Arabzadeh , Charles L. A. Clarke , Ebrahim Bagheri

We introduce an explainability method for biomedical hypothesis generation systems, built on top of the novel Hypothesis Generation Context Retriever framework. Our approach combines semantic graph-based retrieval and relevant…

Information Retrieval · Computer Science 2025-11-11 Ilya Tyagin , Saeideh Valipour , Aliaksandra Sikirzhytskaya , Michael Shtutman , Ilya Safro

The exponential growth of scientific literature necessitates advanced tools for effective knowledge exploration. We present Knowledge Navigator, a system designed to enhance exploratory search abilities by organizing and structuring the…

Information Retrieval · Computer Science 2024-08-29 Uri Katz , Mosh Levy , Yoav Goldberg

The amount of scientific papers published every day is daunting and constantly increasing. Keeping up with literature represents a challenge. If one wants to start exploring new topics it is hard to have a big picture without reading lots…

Information Retrieval · Computer Science 2020-11-10 Alberto Calderone