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The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure

Computational reproducibility of scientific results, that is, the execution of a computational experiment (e.g., a script) using its original settings (data, code, etc.), should always be possible. However, reproducibility has become a…

Human-Computer Interaction · Computer Science 2025-04-15 Lázaro Costa , Susana Barbosa , Jácome Cunha

We propose a scalable track-before-detect (TBD) tracking method based on a Poisson/multi-Bernoulli model. To limit computational complexity, we approximate the exact multi-Bernoulli mixture posterior probability density function (pdf) by a…

Signal Processing · Electrical Eng. & Systems 2021-09-06 Thomas Kropfreiter , Jason L. Williams , Florian Meyer

Machine learning (ML) is an increasingly important scientific tool supporting decision making and knowledge generation in numerous fields. With this, it also becomes more and more important that the results of ML experiments are…

Machine Learning · Computer Science 2020-06-23 Sheeba Samuel , Frank Löffler , Birgitta König-Ries

This work introduces a companion reproducible paper with the aim of allowing the exact replication of the methods, experiments, and results discussed in a previous work [5]. In that parent paper, we proposed many and varied techniques for…

Data Structures and Algorithms · Computer Science 2019-12-30 Antonio Fariña , Miguel A. Martínez-Prieto , Francisco Claude , Gonzalo Navarro , Juan J. Lastra-Díaz , Nicola Prezza , Diego Seco

Lack of repeatability and generalisability are two significant threats to continuing scientific development in Natural Language Processing. Language models and learning methods are so complex that scientific conference papers no longer…

Computation and Language · Computer Science 2018-08-07 Andrew Moore , Paul Rayson

Large language models (LLMs) have shown potential in assisting scientific research, yet their ability to discover high-quality research hypotheses remains unexamined due to the lack of a dedicated benchmark. To address this gap, we…

Computation and Language · Computer Science 2026-04-21 Yujie Liu , Zonglin Yang , Tong Xie , Jinjie Ni , Ben Gao , Yuqiang Li , Shixiang Tang , Wanli Ouyang , Erik Cambria , Dongzhan Zhou

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

Molecular Networks · Quantitative Biology 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Retrieval-augmented in-context learning has emerged as a powerful approach for addressing knowledge-intensive tasks using frozen language models (LM) and retrieval models (RM). Existing work has combined these in simple "retrieve-then-read"…

Computation and Language · Computer Science 2023-01-24 Omar Khattab , Keshav Santhanam , Xiang Lisa Li , David Hall , Percy Liang , Christopher Potts , Matei Zaharia

In an era of exponential scientific growth, identifying novel research ideas is crucial and challenging in academia. Despite potential, the lack of an appropriate benchmark dataset hinders the research of novelty detection. More…

Computation and Language · Computer Science 2025-06-02 Yan Liu , Zonglin Yang , Soujanya Poria , Thanh-Son Nguyen , Erik Cambria

The safe deployment of large language models (LLMs) in high-stakes fields like biomedicine, requires them to be able to reason about cause and effect. We investigate this ability by testing 13 open-source LLMs on a fundamental task:…

Computation and Language · Computer Science 2026-03-13 Sydney Anuyah , Sneha Shajee-Mohan , Ankit-Singh Chauhan , Sunandan Chakraborty

Large language models (LLMs) have demonstrated exceptional performance in understanding and generating semantic patterns, making them promising candidates for sequential recommendation tasks. However, when combined with conventional…

Information Retrieval · Computer Science 2025-05-26 Jiongran Wu , Jiahao Liu , Dongsheng Li , Guangping Zhang , Mingzhe Han , Hansu Gu , Peng Zhang , Li Shang , Tun Lu , Ning Gu

Language models pre-trained on scientific literature corpora have substantially advanced scientific discovery by offering high-quality feature representations for downstream applications. However, these features are often not interpretable,…

Computation and Language · Computer Science 2023-02-17 Cai Yang , Addie Woicik , Hoifung Poon , Sheng Wang

Recent claims of strong performance by Large Language Models (LLMs) on causal discovery are undermined by a key flaw: many evaluations rely on benchmarks likely included in pretraining corpora. Thus, apparent success suggests that LLM-only…

Literature analysis facilitates researchers to acquire a good understanding of the development of science and technology. The traditional literature analysis focuses largely on the literature metadata such as topics, authors, abstracts,…

Artificial Intelligence · Computer Science 2021-01-29 Linlin Hou , Ji Zhang , Ou Wu , Ting Yu , Zhen Wang , Zhao Li , Jianliang Gao , Yingchun Ye , Rujing Yao

The pursuit of scientific knowledge strongly depends on the ability to reproduce and validate research results. It is a well-known fact that the scientific community faces challenges related to transparency, reliability, and the…

Digital Libraries · Computer Science 2023-08-29 Michael Canesche , Roland Leissa , Fernando Magno Quintão Pereira

Bisociative knowledge discovery is an approach that combines elements from two or more "incompatible" domains to generate creative solutions and insight. Inspired by Koestler's notion of bisociation, in this paper we propose a computational…

Social and Information Networks · Computer Science 2018-01-31 Faez Ahmed , Mark Fuge

Reproducibility is a crucial aspect of scientific research that involves the ability to independently replicate experimental results by analysing the same data or repeating the same experiment. Over the years, many works have been proposed…

Digital Libraries · Computer Science 2024-07-16 Andrea Bianchi , Giordano d'Aloisio , Francesca Marzi , Antinisca Di Marco

Literature search is arguably one of the most important phases of the academic and non-academic research. The increase in the number of published papers each year makes manual search inefficient and furthermore insufficient. Hence,…

Information Retrieval · Computer Science 2012-09-27 Onur Küçüktunç , Erik Saule , Kamer Kaya , Ümit V. Çatalyürek

Large language models (LLMs) have demonstrated remarkable abilities in various natural language processing areas, but they demand high computation resources which limits their deployment in real-world. Distillation is one technique to solve…

Computation and Language · Computer Science 2025-07-31 Zhi Zhou , Sirui Miao , Xiangyu Duan , Hao Yang , Min Zhang