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The purpose of this review is to introduce the reader to graph kernels and the corresponding literature, with an emphasis on those with direct application to chemoinformatics. Graph kernels are functions that allow for the inference of…

Machine Learning · Statistics 2022-08-29 James Young

Each complex network (or class of networks) presents specific topological features which characterize its connectivity and highly influence the dynamics of processes executed on the network. The analysis, discrimination, and synthesis of…

Disordered Systems and Neural Networks · Physics 2009-09-29 Luciano da F. Costa , Francisco A. Rodrigues , Gonzalo Travieso , P. R. Villas Boas

With the increasing availability and size of multi-omics datasets, investigating the casual relationships between molecular phenotypes has become an important aspect of exploring underlying biology and genetics. This paper aims to introduce…

Molecular Networks · Quantitative Biology 2022-01-31 Jack Kelly , Carlo Berzuini , Bernard Keavney , Maciej Tomaszewski , Hui Guo

Metaquerying is a datamining technology by which hidden dependencies among several database relations can be discovered. This tool has already been successfully applied to several real-world applications. Recent papers provide only…

Databases · Computer Science 2007-05-23 F. Angiulli , R. Ben-Eliyahu-Zohary , G. Ianni , L. Palopoli

The goal of this paper is to present a number of problems about automorphism groups of nonpositively curved polyhedral complexes and their lattices, meant to highlight possible directions for future research.

Group Theory · Mathematics 2012-09-06 Benson Farb , G. Christopher Hruska , Anne Thomas

Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

Bipartite networks provide an effective resource for representing, characterizing, and modeling several abstract and real-world systems and structures involving binary relations, which include food webs, social interactions, and…

Social and Information Networks · Computer Science 2024-02-01 Alexandre Benatti , Luciano da F. Costa

This is a presentation of recent work on quantum permutation groups, complex Hadamard matrices, and the connections between them. A long list of problems is included. We include as well some conjectural statements, about matrix models.

Quantum Algebra · Mathematics 2013-03-12 Teodor Banica

This document is an informal bibliography of the papers dealing with distributed approximation algorithms. A classic setting for such algorithms is bounded degree graphs, but there is a whole set of techniques that have been developed for…

Data Structures and Algorithms · Computer Science 2023-11-10 Laurent Feuilloley

The topological classification of all known non-magnetic crystalline compounds is now complete, revealing thousands of new candidate topological materials waiting to be explored in the lab.

Materials Science · Physics 2019-03-12 Étienne Lantagne-Hurtubise , Marcel Franz

The unconventional technologies, currently applied at a certain category of materials, difficult to be processed through usual techniques, have undergone during the last 60 years all the stages, since their discovery to their use on a large…

Software Engineering · Computer Science 2009-04-24 Tiberiu Marius Karnyanszky , Mihai Titu

In principle, the rules of links formation of a network model can be considered as a kind of link prediction algorithm. By revisiting the preferential attachment mechanism for generating a scale-free network, here we propose a class of…

Physics and Society · Physics 2012-11-09 Ke Hu , Ju Xiang , Wanchun Yang , Xiaoke Xu , Yi Tang

In this article we survey recent results on rigid dualizing complexes over commutative algebras. We begin by recalling what are dualizing complexes. Next we define rigid complexes, and explain their functorial properties. Due to the…

Algebraic Geometry · Mathematics 2008-07-20 Amnon Yekutieli

This is not in any way meant to be a complete survey on positive curvature. Rather it is a short essay on the fascinating changes in the landscape surrounding positive curvature. In particular, details and many results and references are…

Differential Geometry · Mathematics 2009-02-26 Karsten Grove

This work investigates the framework and performance issues of the composite neural network, which is composed of a collection of pre-trained and non-instantiated neural network models connected as a rooted directed acyclic graph for…

Machine Learning · Computer Science 2021-07-20 Ming-Chuan Yang , Meng Chang Chen

The PageRank is a widely used scoring function of networks in general and of the World Wide Web graph in particular. The PageRank is defined for directed graphs, but in some special cases applications for undirected graphs occur. In the…

Data Structures and Algorithms · Computer Science 2017-02-09 Vince Grolmusz

Inference and prediction are fundamental to the study of complex systems, where network data are often incomplete, inaccurate or obtained indirectly. In this paper, we review recent advances in network sampling and comparison, as well as in…

Statistical Mechanics · Physics 2025-12-09 Francisco A. Rodrigues

These notes fill in results about oriented percolation that are required for the paper [3] ("Forward clusters for degenerate random environments"). Since these are essentially modifications of results found in other sources (but adapted to…

Probability · Mathematics 2016-03-28 Mark Holmes , Thomas S. Salisbury

Link prediction has aroused extensive attention since it can both discover hidden connections and predict future links in the networks. Many unsupervised link prediction algorithms have been proposed to find these links in a variety of…

Social and Information Networks · Computer Science 2021-05-10 Jingwei Wang , Yunlong Ma , Yun Yuan

In this article some noncommutative topological objects such as NC mapping cone and NC mapping cylinder are introduced. We will see that these objects are equipped with the NCCW complex structure of [PEDERSEN]. As a generalization we…

Quantum Algebra · Mathematics 2009-07-14 Vida Milani , Ali Asghar Rezaei