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Recently, some studies started to unveil the wealthy of interactions that occur between groups of nodes when looking at the small scale of interactions taking place in complex networks. Such findings claim for a new systematic methodology…

Physics and Society · Physics 2016-07-26 Cesar H. Comin , João B. Bunoro , Matheus P. Viana , Luciano da F. Costa

We study the micromechanics of collagen-I gel with the goal of bridging the gap between theory and experiment in the study of biopolymer networks. Three-dimensional images of fluorescently labeled collagen are obtained by confocal…

Soft Condensed Matter · Physics 2009-09-29 Andrew M. Stein , David A. Vader , David A. Weitz , Leonard M. Sander

The formation of neuron networks is a process of fundamental importance for understanding the development of the nervous system and for creating biomimetic devices for tissue engineering and neural repair. The basic process that controls…

Cell Behavior · Quantitative Biology 2022-05-16 Ilya Yurchenko , Matthew Farwell , Donovan D. Brady , Cristian Staii

The creation and ultrastructure of kink-bands in flax fibres are key issues for developing more and more performing biobased composite materials. Nevertheless, despite many hypotheses and structural characterization, the exact origin of…

Pattern formation and evolution in unsynchronizable complex networks are investigated. Due to the asymmetric topology, the synchronous patterns formed in complex networks are irregular and nonstationary. For coupling strength immediately…

Chaotic Dynamics · Physics 2007-05-23 Xingang Wang , Meng Zhan , Ghuguang Guan , Choy Heng Lai

We consider the problem of an inextensible but flexible fiber advected by a steady chaotic flow, and ask the simple question whether the fiber can spontaneously knot itself. Using a 1D Cosserat model, a simple local viscous drag model and…

Soft Condensed Matter · Physics 2021-04-21 Benjamin Favier

Large-scale force generation is essential for biological functions such as cell motility, embryonic development, and muscle contraction. In these processes, forces generated at the molecular level by motor proteins are transmitted by…

Soft Condensed Matter · Physics 2016-04-05 Pierre Ronceray , Chase Broedersz , Martin Lenz

The origin and evolution of structure in the Universe is one of the major questions occupying astronomers today. An understanding of the Lyalpha absorbers seen in QSO spectra is an important part of this program since such absorbers can be…

Astrophysics · Physics 2007-05-23 Simon L. Morris

Structure formation and constant reorganization of the actin cytoskeleton are key requirements for the function of living cells. Here we show that a minimal reconstituted system consisting of actin filaments, crosslinking molecules and…

Biological Physics · Physics 2015-05-27 Simone Köhler , Volker Schaller , Andreas R. Bausch

We study a generic family of nonlinear dynamics on undirected networks generalising linear consensus. We find a compact expression for its equilibrium points in terms of the topology of the network and classify their stability using the…

Dynamical Systems · Mathematics 2021-12-07 Marc Homs-Dones , Karel Devriendt , Renaud Lambiotte

We study properties of multi-layered, interconnected networks from an ensemble perspective, i.e. we analyze ensembles of multi-layer networks that share similar aggregate characteristics. Using a diffusive process that evolves on a…

Physics and Society · Physics 2017-01-24 Nicolas Wider , Antonios Garas , Ingo Scholtes , Frank Schweitzer

The analysis of the activity of neuronal cultures is considered to be a good proxy of the functional connectivity of in vivo neuronal tissues. Thus, the functional complex network inferred from activity patterns is a promising way to…

Neurons and Cognition · Quantitative Biology 2014-09-09 Sara Teller , Clara Granell , Manlio De Domenico , Jordi Soriano , Sergio Gomez , Alex Arenas

We investigate the application of mesoscopic response functions (MRFs) to characterize a large set of networks of fungi and slime moulds grown under a wide variety of different experimental treatments, including inter-species competition…

Quantitative Methods · Quantitative Biology 2017-03-03 Sang Hoon Lee , Mark D. Fricker , Mason A. Porter

Compared to the heavily studied surface drainage systems, the mountain ridge systems have been a subject of less attention even on the empirical level, despite the fact that their structure is richer. To reduce this deficiency, we analyze…

Reconstituted filamentous actin networks with myosin motor proteins form active gels, in which motor proteins generate forces that drive the network far from equilibrium. This motor activity can also strongly affect the network elasticity;…

Soft Condensed Matter · Physics 2010-09-21 C. P. Broedersz , F. C. MacKintosh

The actin cytoskeleton in living cells generates forces in conjunction with myosin motor proteins to directly and indirectly drive essential cellular processes. The semiflexible filaments of the cytoskeleton can respond nonlinearly to the…

Soft Condensed Matter · Physics 2019-12-19 D. Mizuno , C. Tardin , C. F. Schmidt

We investigate the electronic and optical properties of lateral heterostructures made of alternated armchair ribbons of graphene and hexagonal boron nitride. It is known that the gapwidth of these heterostructures can be classified into…

Materials Science · Physics 2026-01-22 Elisa Serrano Richaud , Sylvain Latil , Lorenzo Sponza

Activity can organize matter in unique configurations inaccessible to equilibrium systems, including a sundry of spiraling shapes seen in nature that range from galaxies to living tissues to fossilized stromatolites. How these dynamic yet…

Soft Condensed Matter · Physics 2023-05-23 Xingting Gong , Manu Prakash

Fluid-structure interactions between active and passive components are important for many biological systems to function. A particular example is chromatin in the cell nucleus, where ATP-powered processes drive coherent motions of the…

Soft Condensed Matter · Physics 2024-02-15 Scott Weady , David B. Stein , Alexandra Zidovska , Michael J. Shelley

Patchy colloids with highly directional interactions are ideal building blocks to control the local arrangements resulting from their spontaneous self-organization. Here we propose their use, combined with substrates and nonequilibrium…

Soft Condensed Matter · Physics 2013-03-21 C. S. Dias , N. A. M. Araújo , M. M. Telo da Gama