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How can we learn effective node representations on textual graphs? Graph Neural Networks (GNNs) that use Language Models (LMs) to encode textual information of graphs achieve state-of-the-art performance in many node classification tasks.…

Control Flow Graphs and Function Call Graphs have become pivotal in providing a detailed understanding of program execution and effectively characterizing the behavior of malware. These graph-based representations, when combined with Graph…

Cryptography and Security · Computer Science 2024-12-06 Hesamodin Mohammadian , Griffin Higgins , Samuel Ansong , Roozbeh Razavi-Far , Ali A. Ghorbani

We introduce SketchGNN, a convolutional graph neural network for semantic segmentation and labeling of freehand vector sketches. We treat an input stroke-based sketch as a graph, with nodes representing the sampled points along input…

Computer Vision and Pattern Recognition · Computer Science 2021-03-26 Lumin Yang , Jiajie Zhuang , Hongbo Fu , Xiangzhi Wei , Kun Zhou , Youyi Zheng

Graph neural network (GNN)'s success in graph classification is closely related to the Weisfeiler-Lehman (1-WL) algorithm. By iteratively aggregating neighboring node features to a center node, both 1-WL and GNN obtain a node representation…

Machine Learning · Computer Science 2021-10-27 Muhan Zhang , Pan Li

Large Language Models (LLMs) have demonstrated strong reasoning abilities, making them suitable for complex tasks such as graph computation. Traditional reasoning steps paradigm for graph problems is hindered by unverifiable steps, limited…

Computation and Language · Computer Science 2024-10-28 Qifan Zhang , Xiaobin Hong , Jianheng Tang , Nuo Chen , Yuhan Li , Wenzhong Li , Jing Tang , Jia Li

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved state-of-the-art performance in tasks such as node classification and link prediction. However, most existing GNNs are designed to learn…

Machine Learning · Computer Science 2020-02-06 Seongjun Yun , Minbyul Jeong , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

Among the many variants of graph neural network (GNN) architectures capable of modeling data with cross-instance relations, an important subclass involves layers designed such that the forward pass iteratively reduces a graph-regularized…

Machine Learning · Computer Science 2025-03-03 Haitian Jiang , Renjie Liu , Zengfeng Huang , Yichuan Wang , Xiao Yan , Zhenkun Cai , Minjie Wang , David Wipf

As a powerful tool for modeling graph data, Graph Neural Networks (GNNs) have received increasing attention in both academia and industry. Nevertheless, it is notoriously difficult to deploy GNNs on industrial scale graphs, due to their…

Machine Learning · Computer Science 2024-01-09 Zhongshu Zhu , Bin Jing , Xiaopei Wan , Zhizhen Liu , Lei Liang , Jun zhou

An effective and efficient encoding of the source code of a computer program is critical to the success of sequence-to-sequence deep neural network models for tasks in computer program comprehension, such as automated code summarization and…

Artificial Intelligence · Computer Science 2021-11-16 Tenzin Jinpa , Yong Gao

Graph Convolutional Neural Networks (GCNNs) are generalizations of CNNs to graph-structured data, in which convolution is guided by the graph topology. In many cases where graphs are unavailable, existing methods manually construct graphs…

Machine Learning · Computer Science 2019-09-17 Xiang Gao , Wei Hu , Zongming Guo

While Graph Neural Network (GNN) has shown superiority in learning node representations of homogeneous graphs, leveraging GNN on heterogeneous graphs remains a challenging problem. The dominating reason is that GNN learns node…

Social and Information Networks · Computer Science 2020-09-22 Ziyue Qiao , Pengyang Wang , Yanjie Fu , Yi Du , Pengfei Wang , Yuanchun Zhou

Knowledge graph (KG) link prediction aims to infer new facts based on existing facts in the KG. Recent studies have shown that using the graph neighborhood of a node via graph neural networks (GNNs) provides more useful information compared…

Computation and Language · Computer Science 2024-02-15 Vardaan Pahuja , Boshi Wang , Hugo Latapie , Jayanth Srinivasa , Yu Su

Graph condensation (GC) is an emerging technique designed to learn a significantly smaller graph that retains the essential information of the original graph. This condensed graph has shown promise in accelerating graph neural networks…

Machine Learning · Computer Science 2025-11-11 Shengbo Gong , Juntong Ni , Noveen Sachdeva , Carl Yang , Wei Jin

Graph neural networks (GNNs) are widely applied in graph data modeling. However, existing GNNs are often trained in a task-driven manner that fails to fully capture the intrinsic nature of the graph structure, resulting in sub-optimal node…

Machine Learning · Computer Science 2024-07-17 Zhenhua Huang , Kunhao Li , Shaojie Wang , Zhaohong Jia , Wentao Zhu , Sharad Mehrotra

Synthetic Aperture Radar (SAR) Automatic Target Recognition (ATR) is the key technique for remote sensing image recognition. The state-of-the-art works exploit the deep convolutional neural networks (CNNs) for SAR ATR, leading to high…

Computer Vision and Pattern Recognition · Computer Science 2023-05-15 Bingyi Zhang , Sasindu Wijeratne , Rajgopal Kannan , Viktor Prasanna , Carl Busart

Recent advances in Graph Neural Networks (GNNs) have explored the potential of random noise as an input feature to enhance expressivity across diverse tasks. However, naively incorporating noise can degrade performance, while architectures…

Machine Learning · Computer Science 2025-02-05 Xiyuan Wang , Muhan Zhang

Graph classification is an important learning task for graph-structured data. Graph neural networks (GNNs) have recently gained growing attention in graph learning and have shown significant improvements in many important graph problems.…

Machine Learning · Computer Science 2024-01-31 Tao Wen , Elynn Chen , Yuzhou Chen

The growing need for Trusted AI (TAI) highlights the importance of interpretability and robustness in machine learning models. However, many existing tools overlook graph data and rarely combine these two aspects into a single solution.…

Machine Learning · Computer Science 2026-03-23 Kirill Lukyanov , Mikhail Drobyshevskiy , Georgii Sazonov , Mikhail Soloviov , Ilya Makarov

Graph Neural Networks (GNNs) have been extensively used for mining graph-structured data with impressive performance. However, because these traditional GNNs do not distinguish among various downstream tasks, embeddings embedded by them are…

Machine Learning · Computer Science 2024-09-20 Jianpeng Chen , Yujing Wang , Ming Zeng , Zongyi Xiang , Bitan Hou , Yunhai Tong , Ole J. Mengshoel , Yazhou Ren

We present GNN-Suite, a robust modular framework for constructing and benchmarking Graph Neural Network (GNN) architectures in computational biology. GNN-Suite standardises experimentation and reproducibility using the Nextflow workflow to…

Machine Learning · Computer Science 2025-05-19 Sebestyén Kamp , Giovanni Stracquadanio , T. Ian Simpson