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Increasing emphasis on data and quantitative methods in the biomedical sciences is making biological research more computational. Collecting, curating, processing, and analysing large genomic and imaging data sets poses major computational…

Quantitative Methods · Quantitative Biology 2021-09-22 Elisabeth Roesch , Joe G. Greener , Adam L. MacLean , Huda Nassar , Christopher Rackauckas , Timothy E. Holy , Michael P. H. Stumpf

Current mobile manipulators and high-fidelity simulators lack the ability to seamlessly operate and simulate across integrated environments spanning sea, air, and land. To address this gap, we introduce Aerial-Aquatic Manipulators (AAMs) in…

Underwater gliders are widely utilized for ocean sampling, surveillance, and other various oceanic applications. In the context of complex ocean environments, gliders may yield poor navigation performance due to strong ocean currents, thus…

Robotics · Computer Science 2023-12-21 Ruochu Yang , Mengxue Hou , Chad Lembke , Catherine Edwards , Fumin Zhang

Boundary layer turbulence, particularly the vertical fluxes of momentum, shapes the evolution of winds and currents and plays a critical role in weather, climate, and biogeochemical processes. In this work, a unified, data-driven…

Atmospheric and Oceanic Physics · Physics 2025-11-04 Renaud Falga , Sara Shamekh , Laure Zanna

Motivation: Estimating model parameters from experimental observations is one of the key challenges in systems biology and can be computationally very expensive. While the Julia programming language was recently developed as a high-level…

Quantitative Methods · Quantitative Biology 2020-11-06 Paul F. Lang , Sungho Shin , Victor M. Zavala

Accurate ocean forecasting systems are essential for understanding marine dynamics, which play a crucial role in sectors such as shipping, aquaculture, environmental monitoring, and coastal risk management. Traditional numerical solvers,…

Atmospheric and Oceanic Physics · Physics 2025-07-01 Daniel Holmberg , Emanuela Clementi , Italo Epicoco , Teemu Roos

This article describes the Wave Kinetic Solver \WavKinSns, a software developed in the Julia language for solving different types of wave kinetic equations in an efficient and modular manner. \WavKinS already solves the wave kinetic…

Chaotic Dynamics · Physics 2025-04-02 Giorgio Krstulovic , Vincent Labarre

The julia package integrates the Julia programming language into Stata. Users can transfer data between Stata and Julia, issue Julia commands to analyze and plot, and pass results back to Stata. Julia's econometric ecosystem is not as…

Econometrics · Economics 2025-05-05 David Roodman

Astronomy is entering in a new era of Extreme Intensive Data Computation and we have identified three major issues the new generation of projects have to face: Resource optimization, Heterogeneous Software Ecosystem and Data Transfer. We…

Instrumentation and Methods for Astrophysics · Physics 2012-12-11 Nicolas Kamennoff , Sébastien Foucaud , Sébastien Reybier

Cartesian-grid methods in combination with immersed-body and volume-of-fluid methods are ideally suited for simulating breaking waves around ships. A surface panelization of the ship hull is used as input to impose body-boundary conditions…

Agent based modelling is a simulation method in which autonomous agents interact with their environment and one another, given a predefined set of rules. It is an integral method for modelling and simulating complex systems, such as…

Multiagent Systems · Computer Science 2022-01-10 George Datseris , Ali R. Vahdati , Timothy C. DuBois

The Fast Fourier Transform (FFT) is a fundamental numerical technique with widespread application in a range of scientific problems. As scientific simulations attempt to exploit exascale systems, there has been a growing demand for…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-21 Sana Taghipour Anvari , Julian Samaroo , Matin Raayai Ardakani , David Kaeli

Given multi-model ensemble climate projections, the goal is to accurately and reliably predict future sea-level rise while lowering the uncertainty. This problem is important because sea-level rise affects millions of people in coastal…

Atmospheric and Oceanic Physics · Physics 2023-10-25 Subhankar Ghosh , Shuai An , Arun Sharma , Jayant Gupta , Shashi Shekhar , Aneesh Subramanian

Seasonal climate forecasts are socioeconomically important for managing the impacts of extreme weather events and for planning in sectors like agriculture and energy. Climate predictability on seasonal timescales is tied to boundary effects…

Atmospheric and Oceanic Physics · Physics 2024-06-14 Chenggong Wang , Michael S. Pritchard , Noah Brenowitz , Yair Cohen , Boris Bonev , Thorsten Kurth , Dale Durran , Jaideep Pathak

Acoustic propagation models are widely used in numerous oceanic and other underwater applications. Most conventional models are approximate solutions of the acoustic wave equation, and require accurate environmental knowledge to be…

Sound · Computer Science 2023-08-25 Kexin Li , Mandar Chitre

Computational micromagnetics has become an essential tool in academia and industry to support fundamental research and the design and development of devices. Consequently, computational micromagnetics is widely used in the community, and…

Computational Physics · Physics 2021-05-19 Marijan Beg , Martin Lang , Hans Fangohr

Unsustainable exploitation of the oceans exacerbated by global warming is threatening coastal communities worldwide. Accurate and timely monitoring of maritime activity is an essential step to effective governance and to inform future…

Machine Learning · Computer Science 2025-04-29 Henry Herzog , Joshua Hansen , Yawen Zhang , Patrick Beukema

AnyMOD.jl is a Julia framework for creating large-scale energy system models with multiple periods of capacity expansion. It applies a novel graphbased approach that was developed to address the challenges in modeling high levels of…

Physics and Society · Physics 2022-12-21 Leonard Göke

The ocean vast unexplored regions and diverse soft-bodied marine organisms have spurred interest in bio-inspired underwater soft robotics. Recent advances have enabled new capabilities in underwater movement, sensing, and interaction.…

Robotics · Computer Science 2025-08-19 Lei Li , Boyang Qin , Wenzhuo Gao , Yanyu Li , Yiyuan Zhang , Bo Wang , Shihan Kong , Jian Wang , Dekui He , Junzhi Yu

Underwater robot interventions require a high level of safety and reliability. A major challenge to address is a robust and accurate acquisition of localization estimates, as it is a prerequisite to enable more complex tasks, e.g. floating…

Robotics · Computer Science 2019-06-13 Arturo Gomez Chavez , Qingwen Xu , Christian A. Mueller , Sören Schwertfeger , Andreas Birk
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