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The field of neural rendering has witnessed significant progress with advancements in generative models and differentiable rendering techniques. Though 2D diffusion has achieved success, a unified 3D diffusion pipeline remains unsettled.…

Computer Vision and Pattern Recognition · Computer Science 2025-12-22 Yushi Lan , Fangzhou Hong , Shangchen Zhou , Shuai Yang , Xuyi Meng , Yongwei Chen , Zhaoyang Lyu , Bo Dai , Xingang Pan , Chen Change Loy

Generative models have achieved impressive results in many domains including image and text generation. In the natural sciences, generative models have led to rapid progress in automated drug discovery. Many of the current methods focus on…

Machine Learning · Computer Science 2019-09-04 Jordan Hoffmann , Louis Maestrati , Yoshihide Sawada , Jian Tang , Jean Michel Sellier , Yoshua Bengio

Transformer-based autoregressive models offer an efficient alternative to diffusion- and flow-matching-based approaches for generating 3D molecules. One challenge remains: standard transformer architectures require a sequential ordering of…

Machine Learning · Computer Science 2026-05-07 Daniel Rose , Roxane Axel Jacob , Johannes Kirchmair , Thierry Langer

Organic reaction, the foundation of modern chemical industry, is crucial for new material development and drug discovery. However, deciphering reaction mechanisms and modeling multi-molecular relationships remain formidable challenges due…

Chemical Physics · Physics 2025-08-13 Lirong Wu , Junjie Wang , Zhifeng Gao , Xiaohong Ji , Rong Zhu , Xinyu Li , Linfeng Zhang , Guolin Ke , Weinan E

Developing an effective molecular generation framework even with a limited number of molecules is often important for its practical deployment, e.g., drug discovery, since acquiring task-related molecular data requires expensive and…

Machine Learning · Computer Science 2024-07-17 Seojin Kim , Jaehyun Nam , Sihyun Yu , Younghoon Shin , Jinwoo Shin

Diffusion-based decoding has recently emerged as an appealing alternative to autoregressive (AR) generation, offering the potential to update multiple tokens in parallel and reduce latency. However, diffusion vision language models (dVLMs)…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Lunbin Zeng , Jingfeng Yao , Bencheng Liao , Hongyuan Tao , Wenyu Liu , Xinggang Wang

The paradigm shift toward structure-driven molecule generation has been propelled by advances in deep generative models, such as variational auto-encoders and diffusion models. However, these generative models for molecular design remain…

Machine Learning · Computer Science 2026-04-17 Peidong Liu , Wenbo Zhang , Wei Ju , Jiancheng Lv , Xianggen Liu

Lung nodule proposals generation is the primary step of lung nodule detection and has received much attention in recent years . In this paper, we first construct a model of 3-dimension Convolutional Neural Network (3D CNN) to generate lung…

Computer Vision and Pattern Recognition · Computer Science 2018-02-08 Hui Wu , Matrix Yao , Albert Hu , Gaofeng Sun , Xiaokun Yu , Jian Tang

We present MeshLLM, a novel framework that leverages large language models (LLMs) to understand and generate text-serialized 3D meshes. Our approach addresses key limitations in existing methods, including the limited dataset scale when…

We present LTM3D, a Latent Token space Modeling framework for conditional 3D shape generation that integrates the strengths of diffusion and auto-regressive (AR) models. While diffusion-based methods effectively model continuous latent…

Computer Vision and Pattern Recognition · Computer Science 2025-06-02 Xin Kang , Zihan Zheng , Lei Chu , Yue Gao , Jiahao Li , Hao Pan , Xuejin Chen , Yan Lu

We present an investigation into diffusion models for molecular generation, with the aim of better understanding how their predictions compare to the results of physics-based calculations. The investigation into these models is driven by…

Structure-based drug design, i.e., finding molecules with high affinities to the target protein pocket, is one of the most critical tasks in drug discovery. Traditional solutions, like virtual screening, require exhaustively searching on a…

Biomolecules · Quantitative Biology 2023-02-16 Shuqi Lu , Lin Yao , Xi Chen , Hang Zheng , Di He , Guolin Ke

We present a cascaded diffusion model based on a part-level implicit 3D representation. Our model achieves state-of-the-art generation quality and also enables part-level shape editing and manipulation without any additional training in…

Computer Vision and Pattern Recognition · Computer Science 2024-03-21 Juil Koo , Seungwoo Yoo , Minh Hieu Nguyen , Minhyuk Sung

Domain-specific languages (DSLs) play an increasingly important role in the generation of high performing software. They allow the user to exploit specific knowledge encoded in the constructs for the generation of code adapted to a…

Mathematical Software · Computer Science 2019-05-08 Pramod Kumbhar , Omar Awile , Liam Keegan , Jorge Blanco Alonso , James King , Michael Hines , Felix Schürmann

Next-generation multimodal foundation models capable of any-to-any cross-modal generation and multi-turn interaction will serve as core components of artificial general intelligence systems, playing a pivotal role in human-machine…

Computation and Language · Computer Science 2025-10-17 Run Luo , Xiaobo Xia , Lu Wang , Longze Chen , Renke Shan , Jing Luo , Min Yang , Tat-Seng Chua

Diffusion language models (DLMs) have strong theoretical efficiency but are limited by fixed-length decoding and incompatibility with key-value (KV) caches. Block diffusion mitigates these issues, yet still enforces a fixed block size and…

Computation and Language · Computer Science 2025-09-30 Yangzhou Liu , Yue Cao , Hao Li , Gen Luo , Zhe Chen , Weiyun Wang , Xiaobo Liang , Biqing Qi , Lijun Wu , Changyao Tian , Yanting Zhang , Yuqiang Li , Tong Lu , Yu Qiao , Jifeng Dai , Wenhai Wang

General-purpose 3D modeling in chemistry encompasses molecules and materials, requiring both generative and predictive capabilities. However, most existing AI approaches are optimized for a single domain (molecules or materials) and a…

Score Distillation Sampling (SDS) enables high-quality text-to-3D generation by supervising 3D models through the denoising of multi-view 2D renderings, using a pretrained text-to-image diffusion model to align with the input prompt and…

Computer Vision and Pattern Recognition · Computer Science 2025-09-22 Weimin Bai , Yubo Li , Weijian Luo , Wenzheng Chen , He Sun

Diffusion models are important in tissue engineering as they enable an understanding of molecular delivery to cells in tissue constructs. As three-dimensional (3D) tissue constructs become larger, more intricate, and more clinically…

Tissues and Organs · Quantitative Biology 2015-12-22 Richard J. McMurtrey

RNA inverse folding, designing sequences to form specific 3D structures, is critical for therapeutics, gene regulation, and synthetic biology. Current methods, focused on sequence recovery, struggle to address structural objectives like…

Machine Learning · Computer Science 2026-01-28 Qi Si , Xuyang Liu , Penglei Wang , Xin Guo , Yuan Qi , Yuan Cheng
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