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Multiple sclerosis (MS) is a demyelinating disease that affects more than 2 million people worldwide. The most used imaging technique to help in its diagnosis and follow-up is magnetic resonance imaging (MRI). Fluid Attenuated Inversion…

Computer Vision and Pattern Recognition · Computer Science 2018-07-26 Paulo G. L. Freire , Ricardo J. Ferrari

With the application of hematopoietic stem cell transplantation and new drugs, the progression-free survival rate and overall survival rate of multiple myeloma have been greatly improved, but it is still considered as a kind of disease that…

Quantitative Methods · Quantitative Biology 2024-03-05 Jianfeng Chen , Jize Xiong , Yixu Wang , Qi Xin , Hong Zhou

X-ray crystallography is a powerful tool to determine the protein 3D structure. However, it is time-consuming and expensive, and not all proteins can be successfully crystallized, particularly for membrane proteins. Although nuclear…

Biomolecules · Quantitative Biology 2013-12-10 Jiapu Zhang , Jie Sun , Changzhi Wu

Automated analysis of peripheral blood smears for Acute Lymphoblastic Leukemia (ALL) is hindered by low contrast and substantial variability in cytoplasmic appearance, which complicate conventional membrane-based segmentation. We found that…

Computer Vision and Pattern Recognition · Computer Science 2026-05-14 Larissa Ferreira Rodrigues Moreira , Leonardo Gabriel Ferreira Rodrigues , Rodrigo Moreira , André Ricardo Backes

Paramagnetic rim lesions (PRLs) are an emerging biomarker in multiple sclerosis (MS). Manual identification and rim segmentation of PRLs on quantitative susceptibility mapping (QSM) images are time-consuming. Deep learning-based QSM-RimNet…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 Ha Luu , Mert Sisman , Ilhami Kovanlikaya , Tam Vu , Pascal Spincemaille , Yi Wang , Francesca Bagnato , Susan Gauthier , Thanh Nguyen

Recent literatures reported blue-green emission from amyloid fibril as exclusive signature of fibril formation. This unusual visible luminescence is regularly used to monitor fibril growth. Blue-green emission has also been observed in…

Chemical Physics · Physics 2014-05-13 Sohini Sarkar , Abhigyan Sengupta , Partha Hazra , Pankaj Mandal

We introduce a model checking approach to diagnose the emerging of bone pathologies. The implementation of a new model of bone remodeling in PRISM has led to an interesting characterization of osteoporosis as a defective bone remodeling…

Logic in Computer Science · Computer Science 2011-11-10 Pietro Liò , Emanuela Merelli , Nicola Paoletti

Alzheimer's disease (AD) is a neurodegenerative disorder that is beginning with amyloidosis, followed by neuronal loss and deterioration in structure, function, and cognition. The accumulation of amyloid-beta in the brain, measured through…

Paleness or pallor is a manifestation of blood loss or low hemoglobin concentrations in the human blood that can be caused by pathologies such as anemia. This work presents the first automated screening system that utilizes pallor site…

Computer Vision and Pattern Recognition · Computer Science 2017-03-20 Sohini Roychowdhury , Donny Sun , Matthew Bihis , Johnny Ren , Paul Hage , Humairat H. Rahman

The degeneration of articular cartilage (AC) occurs in osteoarthritis (OA), which is a leading cause of pain and disability in middle-aged and older people. The early disease related changes in cartilage extra-cellular matrix (ECM) start…

Protein amyloid fibrils are a form of linear protein aggregates that are implicated in many neurodegenerative diseases. Here, we study the dynamics of amyloid fibril elongation by performing Langevin dynamic simulations on a coarse-grained…

Biological Physics · Physics 2009-10-06 Chiu Fan Lee , James Loken , Letitia Jean , David J. Vaux

X-ray crystallography and nuclear magnetic resonance (NMR) spectroscopy are two powerful tools to determine the protein 3D structure. However, not all proteins can be successfully crystallized, particularly for membrane proteins. Although…

Optimization and Control · Mathematics 2012-12-14 Jiapu Zhang , David D. W. Liu

Liquid chromatography with tandem mass spectrometry (LC-MS/MS) based proteomics is a well-established research field with major applications such as identification of disease biomarkers, drug discovery, drug design and development. In…

Quantitative Methods · Quantitative Biology 2018-01-08 Fatema Tuz Zohora , Ngoc Hieu Tran , Xianglilan Zhang , Lei Xin , Baozhen Shan , Ming Li

Birefringence, an inherent characteristic of optically anisotropic materials, is widely utilized in various imaging applications ranging from material characterizations to clinical diagnosis. Polarized light microscopy enables…

Chronic Myeloid Leukaemia (CML) is a blood-derived proliferative disorder, which is highly associated to a translocation of chromosomes 9 and 22 or the creation of Philadelphia chromosome Ph(+) cases, inducing the synthesis of a chimeric…

Cell Behavior · Quantitative Biology 2020-02-25 A. Vivanco-Lira

Chronic obstructive pulmonary disease (COPD) is a lung disease where early detection benefits the survival rate. COPD can be quantified by classifying patches of computed tomography images, and combining patch labels into an overall…

Computer Vision and Pattern Recognition · Computer Science 2017-03-16 Veronika Cheplygina , Lauge Sørensen , David M. J. Tax , Jesper Holst Pedersen , Marco Loog , Marleen de Bruijne

This research aims to develop an efficient system for screening of diabetic retinopathy. Diabetic retinopathy is the major cause of blindness. Severity of diabetic retinopathy is recognized by some features, such as blood vessel area,…

Image and Video Processing · Electrical Eng. & Systems 2020-01-08 Faisal Ghaffar , Sarwar Khan , Bunyarit Uyyanonvara , Chanjira Sinthanayothin , Hirohiko Kaneko

It is well established that amyloid fibril solubility is protein specific, but how solubility depends on the interactions between the fibril building blocks is not clear. Here we use a simple protein model and perform Monte Carlo…

Biological Physics · Physics 2015-12-11 L. G. Rizzi , S. Auer

This paper is devoted to the problem of identification of colloidal assemblies using the example of two-dimensional coatings (monolayer assemblies). Colloidal systems are used in various fields of science and technology, for example, in…

Soft Condensed Matter · Physics 2026-02-19 L. T. Khusainova , K. S. Kolegov

Formation of amyloid fibrils of various amyloidogenic proteins is dramatically enhanced by ultrasound irradiation. For applying this phenomenon to the study of protein aggregation science and diagnosis of neurodegenerative diseases, a…