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Predicting protein function from amino acid sequence remains a central challenge in data-scarce (low-$N$) regimes, limiting machine learning-guided protein design when only small amounts of assay-labeled sequence-function data are…

Machine Learning · Computer Science 2025-08-27 Darin Tsui , Kunal Talreja , Amirali Aghazadeh

Large language models (LLMs) demonstrate exceptional performance on tasks requiring complex linguistic abilities, such as reference disambiguation and metaphor recognition/generation. Although LLMs possess impressive capabilities, their…

Computation and Language · Computer Science 2025-09-16 Yi Jing , Zijun Yao , Hongzhu Guo , Lingxu Ran , Xiaozhi Wang , Lei Hou , Juanzi Li

In-context learning, the ability to adapt based on a few examples in the input prompt, is a ubiquitous feature of large language models (LLMs). However, as LLMs' in-context learning abilities continue to improve, understanding this…

Machine Learning · Computer Science 2024-10-03 Can Demircan , Tankred Saanum , Akshay K. Jagadish , Marcel Binz , Eric Schulz

Fine-grained steering of language model outputs is essential for safety and reliability. Prompting and finetuning are widely used to achieve these goals, but interpretability researchers have proposed a variety of representation-based…

Computation and Language · Computer Science 2025-03-05 Zhengxuan Wu , Aryaman Arora , Atticus Geiger , Zheng Wang , Jing Huang , Dan Jurafsky , Christopher D. Manning , Christopher Potts

Sparse autoencoders (SAEs) are a mechanistic interpretability technique that have been used to provide insight into learned concepts within large protein language models. Here, we employ TopK and Ordered SAEs to investigate autoregressive…

Understanding training dynamics and feature evolution is crucial for the mechanistic interpretability of large language models (LLMs). Although sparse autoencoders (SAEs) have been used to identify features within LLMs, a clear picture of…

Machine Learning · Computer Science 2025-06-04 Yang Xu , Yi Wang , Hengguan Huang , Hao Wang

Sparse Autoencoders (SAEs) aim to decompose the activation space of large language models (LLMs) into human-interpretable latent directions or features. As we increase the number of features in the SAE, hierarchical features tend to split…

Computation and Language · Computer Science 2025-11-18 David Chanin , James Wilken-Smith , Tomáš Dulka , Hardik Bhatnagar , Satvik Golechha , Joseph Bloom

Sparse Autoencoders have emerged as powerful tools for interpreting the internal representations of Large Language Models, yet they often fail to capture domain-specific features not prevalent in their training corpora. This paper…

Machine Learning · Computer Science 2025-07-18 Nikita Koriagin , Yaroslav Aksenov , Daniil Laptev , Gleb Gerasimov , Nikita Balagansky , Daniil Gavrilov

Sparse Autoencoders (SAEs) can extract interpretable features from large language models (LLMs) without supervision. However, their effectiveness in downstream steering tasks is limited by the requirement for contrastive datasets or large…

Computation and Language · Computer Science 2026-05-05 Seonglae Cho , Zekun Wu , Adriano Koshiyama

Sparse autoencoders (SAEs) decompose large language model (LLM) activations into latent features that reveal mechanistic structure. Conventional SAEs train on broad data distributions, forcing a fixed latent budget to capture only…

Machine Learning · Computer Science 2025-08-14 Charles O'Neill , Mudith Jayasekara , Max Kirkby

Watermarking LLM-generated text is critical for content attribution and misinformation prevention. However, existing methods compromise text quality, require white-box model access and logit manipulation. These limitations exclude API-based…

Computation and Language · Computer Science 2026-01-13 Zhuohao Yu , Xingru Jiang , Weizheng Gu , Yidong Wang , Qingsong Wen , Shikun Zhang , Wei Ye

While vision models are highly capable, their internal mechanisms remain poorly understood -- a challenge which sparse autoencoders (SAEs) have helped address in language, but which remains underexplored in vision. We address this gap by…

Computer Vision and Pattern Recognition · Computer Science 2025-04-14 Sonia Joseph , Praneet Suresh , Ethan Goldfarb , Lorenz Hufe , Yossi Gandelsman , Robert Graham , Danilo Bzdok , Wojciech Samek , Blake Aaron Richards

Decomposing model activations into interpretable components is a key open problem in mechanistic interpretability. Sparse autoencoders (SAEs) are a popular method for decomposing the internal activations of trained transformers into sparse,…

Machine Learning · Computer Science 2024-06-26 Connor Kissane , Robert Krzyzanowski , Joseph Isaac Bloom , Arthur Conmy , Neel Nanda

Analyzing large-scale text corpora is a core challenge in machine learning, crucial for tasks like identifying undesirable model behaviors or biases in training data. Current methods often rely on costly LLM-based techniques (e.g.…

Artificial Intelligence · Computer Science 2025-12-12 Nick Jiang , Xiaoqing Sun , Lisa Dunlap , Lewis Smith , Neel Nanda

There is growing interest in leveraging mechanistic interpretability and controllability to better understand and influence the internal dynamics of large language models (LLMs). However, current methods face fundamental challenges in…

Computation and Language · Computer Science 2025-12-02 Ruben Härle , Felix Friedrich , Manuel Brack , Stephan Wäldchen , Björn Deiseroth , Patrick Schramowski , Kristian Kersting

SAEs have recently been employed as a promising unsupervised approach for understanding the representations of layers of Large Language Models (LLMs). However, with the growth in model size and complexity, training SAEs is computationally…

Computation and Language · Computer Science 2025-09-23 Davide Ghilardi , Federico Belotti , Marco Molinari , Tao Ma , Matteo Palmonari

Large language models (LLMs) are increasingly trained in complex Reinforcement Learning, multi-agent environments, making it difficult to understand how behavior changes over training. Sparse Autoencoders (SAEs) have recently shown to be…

Machine Learning · Computer Science 2026-02-09 John Yan , Michael Yu , Yuqi Sun , Alexander Duffy , Tyler Marques , Matthew Lyle Olson

Large language models (LLMs) encode a diverse range of linguistic features within their latent representations, which can be harnessed to steer their output toward specific target characteristics. In this paper, we modify the internal…

Computation and Language · Computer Science 2025-02-27 Sumanta Bhattacharyya , Pedram Rooshenas

Sparse autoencoders (SAEs) have become an important tool for analyzing and interpreting the activation space of transformer-based language models (LMs). However, SAEs suffer several shortcomings that diminish their utility and internal…

Computation and Language · Computer Science 2025-06-27 Ryosuke Takahashi , Tatsuro Inaba , Kentaro Inui , Benjamin Heinzerling

Sparse Autoencoders (SAEs) have emerged as a powerful unsupervised method for extracting sparse representations from language models, yet scalable training remains a significant challenge. We introduce a suite of 256 SAEs, trained on each…