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We perform extensive molecular dynamics simulations of a charged polymer in a good solvent in the regime where the chain is collapsed. We analyze the dependence of the gyration radius $R_g $ on the reduced Bjerrum length $\ell_B$ and find…

Soft Condensed Matter · Physics 2016-10-05 Anvy Moly Tom , Satyavani Vemparala , R. Rajesh , Nikolai V. Brilliantov

Diffusive transport of small molecules within the internal structures of biological and synthetic material systems is complex because the crowded environment presents chemical and physical barriers to mobility. We explored this mobility…

Soft Condensed Matter · Physics 2020-09-29 Rajarshi Guha , Subhadip Ghosh , Darrell Velegol , Peter J. Butler , Ayusman Sen , Jennifer L. Ross

We study the fracture of reversible double transient networks, constituted of water suspensions of entangled surfactant wormlike micelles reversibly linked by various amounts of telechelic polymers. We provide a state diagram that…

Soft Condensed Matter · Physics 2017-11-17 S. Arora , A. Shabbir , O. Hassager , C. Ligoure , L. Ramos

Neural Collapse refers to the curious phenomenon in the end of training of a neural network, where feature vectors and classification weights converge to a very simple geometrical arrangement (a simplex). While it has been observed…

Machine Learning · Computer Science 2024-11-14 Jingtong Su , Ya Shi Zhang , Nikolaos Tsilivis , Julia Kempe

Using molecular dynamic simulation, we study the stretching of an adsorbed homopolymer in a poor solvent with one end held at a distance $z_e$ from the substrate. We measure the vertical force $f$ on the end of the chain as a function of…

Soft Condensed Matter · Physics 2009-11-10 Franck Celestini , Thoma Frisch , Xabier Oyharcabal

The collapse and swelling behavior of a generic homopolymer is studied using implicit-solvent, explicit-cosolvent Langevin dynamics computer simulations for varying interaction strengths. The systematic investigation reveals that polymer…

Soft Condensed Matter · Physics 2012-11-06 Anja Muzdalo , Jan Heyda , Joachim Dzubiella

We study the mechanical stiffening behavior in two-dimensional (2D) cross-linked networks of semiflexible biopolymer filaments under simple shear. Filamental constituents immersed in a fluid undergo thermally excited bending motions.…

Biological Physics · Physics 2007-05-23 T. Van Dillen , P. R. Onck , E. Van der Giessen

We present analytic and numeric results for percolation in a network formed of interdependent spatially embedded networks. We show results for a treelike and a random regular network of networks each with $(i)$ unconstrained interdependent…

Physics and Society · Physics 2015-06-18 Louis M. Shekhtman , Yehiel Berezin , Michael M. Danziger , Shlomo Havlin

We consider a microscopic model for the failure of soft adhesives in tension based on ideas of bond rupture under dynamic loading. Focusing on adhesive failure under loading at constant velocity, we demonstrate that bi-modal curves of…

Soft Condensed Matter · Physics 2007-05-23 Dominic Vella , L. Mahadevan

Motivated by recent experiments showing that stiff biopolymer gels exhibit highly unusual negative normal elastic stresses, we develop a computational model for stiff polymer networks subject to large strains. In all cases, we find that…

Soft Condensed Matter · Physics 2009-11-13 Enrico Conti , F. C. MacKintosh

The unfolding of a polymer below the $\theta$ point when pulled by an external force is studied both in d=2 on the lattice and in $d=3$ off lattice. A ground state analysis of finite length chains shows that the globule unfolds via multiple…

Statistical Mechanics · Physics 2009-11-07 D. Marenduzzo , A. Maritan , A. Rosa , F. Seno

In biology, there are several processes in which unfolded protein chains are transported along narrow-tube channels. Normally, without such a severe configurational constraint, unfolded polypeptides would not bind to each other. However,…

Soft Condensed Matter · Physics 2019-09-19 Gillian M. Fraser , Eugene M. Terentjev

The pressure distribution beneath a conical sandpile, created by pouring sand from a point source onto a rough rigid support, shows a pronounced minimum below the apex (`the dip'). Recent work of the authors has attempted to explain this…

Statistical Mechanics · Physics 2009-10-31 M. E. Cates , J. Wittmer , J. P. Bouchaud , P. Claudin

We consider random walk model of a semi-flexible polymer chain on a square and a cubic lattice to enumerate conformations of the polymer chain in two and three dimensions, respectively. The bending energy of the chain is assumed as the key…

Soft Condensed Matter · Physics 2020-08-04 Pramod Kumar Mishra

We investigate the kinetics of a polymer collapse due to the formation of irreversible crosslinks between its monomers. Using the contact probability $P(s)$ as a scale-dependent order parameter depending on the chemical distance $s$, our…

Soft Condensed Matter · Physics 2018-08-15 Vittore F. Scolari , Guillaume Mercy , Romain Koszul , Annick Lesne , Julien Mozziconacci

In this work, we introduce a predictive approach for determining fracture nucleation in thermosets based on shortest paths (SPs) of the network topology. This method enumerates SP sets in networks with periodic boundary conditions, with…

Soft Condensed Matter · Physics 2024-05-07 Zheng Yu , Nicholas E. Jackson

We study the enzymatic degradation of an elastic fiber under tension using an an isotropic random-walk model, coupled with binding-unbinding reactions that weaken the fiber. The fiber is represented by a chain of elastic springs in series,…

Statistical Mechanics · Physics 2009-10-08 Ascânio D. Araújo , Arnab Majumdar , Harikrishnan Parame swaran , Béla Suki

Most, but not all, liquid crystals tend to align when subject to shear flow, while most nematic polymeric liquid crystals undergo a tumbling instability, where the director rotate with the flow. The reasons of this instability remain…

Soft Condensed Matter · Physics 2019-07-24 Stefano S. Turzi

Due to their unique structural and mechanical properties, randomly-crosslinked polymer networks play an important role in many different fields, ranging from cellular biology to industrial processes. In order to elucidate how these…

Isostatic networks are minimally rigid and therefore have, generically, nonzero elastic moduli. Regular isostatic networks have finite moduli in the limit of large sizes. However, numerical simulations show that all elastic moduli of…

Disordered Systems and Neural Networks · Physics 2015-06-03 Cristian F. Moukarzel
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