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During the last decades macroecology has identified broad-scale patterns of abundances and diversity of microbial communities and put forward some potential explanations for them. However, these advances are not paralleled by a full…

Populations and Evolution · Quantitative Biology 2024-01-26 José Camacho-Mateu , Aniello Lampo , Matteo Sireci , Miguel Ángel Muñoz , José A. Cuesta

Population dynamics on a rugged landscape is studied analytically and numerically within a simple discrete model for evolution of N individuals in one-dimensional fitness space. We reduce the set of master equations to a single Fokker-Plank…

adap-org · Physics 2015-06-30 Igor Aranson , Lev Tsimring , Valerii Vinokur

Bacteria and their bacteriophages are the most abundant, widespread and diverse groups of biological entities on the planet. In an attempt to understand how the interactions between bacteria, virulent phages and temperate phages might…

Populations and Evolution · Quantitative Biology 2009-11-13 Martin Rosvall , Ian B. Dodd , Sandeep Krishna , Kim Sneppen

In this paper, we use an adaptive modeling framework to model and study how nutritional status (measured by the protein to carbohydrate ratio) may regulate population dynamics and foraging task allocation of social insect colonies.…

Populations and Evolution · Quantitative Biology 2020-05-08 Feng Rao , Marisabel Rodriguez Messan , Angelica Marquez , Nathan Smith , Yun Kang

The identification of key populations shaping the structure and connectivity of metapopulation systems is a major challenge in population ecology. The use of molecular markers in the theoretical framework of population genetics has allowed…

Populations and Evolution · Quantitative Biology 2008-11-21 Alejandro F. Rozenfeld , Sophie Arnaud-Haond , Emilio Hernandez-Garcia , Victor M. Eguiluz , Ester A. Serrao , Carlos M. Duarte

In this paper, we study the significance of ecological interactions and separation of birth and death dynamics in stochastic heterogeneous populations via general birth-death processes. Interactions can manifest through the birth dynamics,…

Populations and Evolution · Quantitative Biology 2025-07-03 Erin Beckman , Heyrim Cho , Linh Huynh

A simple weakly frequency dependent model for the dynamics of a population with a finite number of types is proposed, based upon an advantage of being rare. In the infinite population limit, this model gives rise to a non-smooth dynamical…

Populations and Evolution · Quantitative Biology 2007-05-23 Michael Baake , Uwe Grimm , Harald Jockusch

The complexity of an ecological community can be distilled into a network, where diverse interactions connect species in a web of dependencies. Species interact not only with each other but indirectly through environmental effects, however…

Populations and Evolution · Quantitative Biology 2020-09-09 Justin D. Yeakel , Mathias M. Pires , Marcus A. M. de Aguiar , James L. O'Donnell , Paulo R. Guimarães , Dominique Gravel , Thilo Gross

Since steep declines in a population's size also typically alter its composition, population bottlenecks are considered highly important for evolution. However, despite such significance, the mechanisms governing the impact of a given…

Populations and Evolution · Quantitative Biology 2022-06-28 Emanuele Crosato , Jeffrey N. Philippson , Shashi Thutupalli , Richard G. Morris

It is commonly assumed that the ability to track the frequencies of a set of schemata in the evolving population of an infinite population genetic algorithm (IPGA) under different fitness functions will advance efforts to obtain a theory of…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Keki Burjorjee

This paper is mainly devoted to lay an empirical foundation for further research on complex spatial dynamics of two-population interaction. Based on the US population census data, a rural and urban population interaction model is developed.…

Physics and Society · Physics 2016-06-14 Yanguang Chen , Feng Xu

We discuss a simple model of co-evolution. In order to emphasise the effect of interaction between individuals the entire population is subjected to the same physical environment. Species are emergent structures and extinction, origination…

Statistical Mechanics · Physics 2007-05-23 Kim Christensen , Simone A. di Collobiano , Matt Hall , Henrik J. Jensen

We investigate the complex spatiotemporal dynamics of an ecological network with species dispersal mediated via a mean-field coupling. The local dynamics of the network are governed by the Truscott--Brindley model, which is an important…

Adaptation and Self-Organizing Systems · Physics 2017-09-13 Ramesh Arumugam , Tanmoy Banerjee , Partha Sharathi Dutta

We propose a degree-based coarse graining approach that not just accelerates the evaluation of dynamics on complex networks, but also satisfies the consistency conditions for both equilibrium statistical distributions and nonequilibrium…

Statistical Mechanics · Physics 2010-08-06 Hanshuang Chen , Zhonghuai Hou , Houwen Xin , YiJing Yan

Species sharing a habitat will co-evolve to make use of the available resources, as consumption is modulated by competition and negative feedback loops between consumers and resources. The dietary range of a given species determines the…

Populations and Evolution · Quantitative Biology 2026-05-28 Elliot M. Butterworth , Tim Rogers

On a global level, ecological communities are being perturbed at an unprecedented rate by human activities and environmental instabilities. Yet, we understand little about what factors facilitate or impede long-term persistence of these…

Populations and Evolution · Quantitative Biology 2024-10-24 Johannes Nauta , Manlio De Domenico

Environmental changes greatly influence the evolution of populations. Here, we study the dynamics of a population of two strains, one growing slightly faster than the other, competing for resources in a time-varying binary environment…

Populations and Evolution · Quantitative Biology 2020-07-28 Ami Taitelbaum , Robert West , Michael Assaf , Mauro Mobilia

A fundamental problem in community ecology is to understand how ecological processes such as selection, drift, and immigration give rise to observed patterns in species composition and diversity. Here, we present a simple, analytically…

Populations and Evolution · Quantitative Biology 2016-09-07 Benjamin Dickens , Charles K. Fisher , Pankaj Mehta

We discuss several models of the dynamics of interacting populations. The models are constructed by nonlinear differential equations and have two sets of parameters: growth rates and coefficients of interaction between populations. We…

Adaptation and Self-Organizing Systems · Physics 2013-07-29 Nikolay K. Vitanov , Zlatinka I. Dimitrova

Trophic coherence, a measure of a graph's hierarchical organisation, has been shown to be linked to a graph's structural and dynamical aspects such as cyclicity, stability and normality. Trophic levels of vertices can reveal their…

Physics and Society · Physics 2020-10-08 Giannis Moutsinas , Choudhry Shuaib , Weisi Guo , Stephen Jarvis
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