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We present a simple and computationally efficient coarse-grained and solvent-free model for simulating lipid bilayer membranes. In order to be used in concert with particle-based reaction-diffusion simulations, the model is purely based on…

Biological Physics · Physics 2018-01-31 Mohsen Sadeghi , Thomas R. Weikl , Frank Noé

In this study, a novel method for simulating plasma dynamics using parallel programming has been developed. The equations based on Particle-in-Cell (PIC) method were utilized and adapted for this purpose. We utilized 35 processors from…

Plasma Physics · Physics 2025-11-17 Hadi Barati , Ali Torkaman , Mehdi Fardmanesh

Across many plasma applications, the underlying phenomena and interactions among the involved processes are known to exhibit three-dimensional characteristics. Furthermore, the global properties and evolution of plasma systems are often…

Plasma Physics · Physics 2024-11-11 Maryam Reza , Farbod Faraji , Aaron Knoll

Point multipole expansions are widely used to gain physical insight into complex distributions of charges and to reduce the cost of computing interactions between such distributions. However, practical applications that typically retain…

Classical Physics · Physics 2015-06-03 Charles Baker , Ramu Anandakrishnan , Alexey Onufriev

Nonlinear non-Gaussian state-space models are ubiquitous in statistics, econometrics, information engineering and signal processing. Particle methods, also known as Sequential Monte Carlo (SMC) methods, provide reliable numerical…

Computation · Statistics 2015-09-11 Nikolas Kantas , Arnaud Doucet , Sumeetpal S. Singh , Jan Maciejowski , Nicolas Chopin

Molecular dynamics simulations, with full Coulomb interaction and self-consistent field emission, are used to examine mutual space-charge interactions between beams originating from several emitter areas, in a planar infinite diode. The…

Computational Physics · Physics 2022-06-15 Hakon Valur Haraldsson , Kristinn Torfason , Andrei Manolescu , Agust Valfells

Modeling of biomolecular systems plays an essential role in understanding biological processes, such as ionic flow across channels, protein modification or interaction, and cell signaling. The continuum model described by the…

Biological Physics · Physics 2015-12-08 Yu Qiao , Benzhuo Lu

The non-thermal acceleration of electrons and ions at an oblique, non-relativistic shock is studied using large scale particle-in-cell (PIC) simulations in one spatial dimension. Physical parameters are selected to highlight the role of…

Plasma Physics · Physics 2021-11-01 Naveen Kumar , Brian Reville

Next-generation high-power lasers that can be focused to intensities exceeding 10^23 W/cm^2 are enabling new physics and applications. The physics of how these lasers interact with matter is highly nonlinear, relativistic, and can involve…

By means of hybrid multi-particle collsion--particle-in-cell (MPC-PIC) simulations we study the dynamical scaling of energy and density correlations at equilibrium in moderately coupled 2D and quasi 1D plasmas. We find that the predictions…

Plasma Physics · Physics 2017-04-17 Pierfrancesco Di Cintio , Roberto Livi , Stefano Lepri , Guido Ciraolo

The dissipation mechanism of the magnetic energy in turbulent collisionless space and astrophysical plasmas is still not well understood. Its investigation requires efficient kinetic simulations of the energy transfer in collisionless…

We propose the use of sparse grids to accelerate particle-in-cell (PIC) schemes. By using the so-called `combination technique' from the sparse grids literature, we are able to dramatically increase the size of the spatial cells in…

Computational Physics · Physics 2016-12-21 Lee F Ricketson , Antoine J Cerfon

A challenging and fundamental research problem is the better understanding and control of the turbulent transport of heat in present-day tokamak fusion experiments. Recent developments in numerical methods along with enormous gains in…

Plasma Physics · Physics 2008-02-03 Jeremy Kepner , Scott Parker , Viktor Decyk

The localized deposition of the energy of a laser pulse, as it ablates a solid target, introduces high thermal pressure gradients in the plasma. The thermal expansion of this laser-heated plasma into the ambient medium (ionized residual…

Plasma Physics · Physics 2009-11-30 M E Dieckmann , G Sarri , L Romagnani , I Kourakis , M Borghesi

Recent increases in supercomputing power, driven by the multi-core revolution and accelerators such as the IBM Cell processor, graphics processing units (GPUs) and Intel's Many Integrated Core (MIC) technology have enabled kinetic…

In this paper, we present splitting methods that are based on iterative schemes and applied to plasma simulations. The motivation arose of solving the Coulomb collisions, which are modeled by nonlinear stochastic differential equations. We…

Numerical Analysis · Mathematics 2017-06-22 Juergen Geiser

An efficient technique to simulate turbulent particle-laden flow at high mass loadings within the four-way coupled simulation regime is presented. The technique implements large eddy simulation, discrete phase simulation, a deterministic…

Fluid Dynamics · Physics 2017-09-13 Derrick O. Njobuenwu , Michael Fairweather

An analytical model for the self-modulation instability of a long relativistic proton bunch propagating in uniform plasmas is developed. The self-modulated proton bunch resonantly excites a large amplitude plasma wave (wake field), which…

Plasma Physics · Physics 2015-05-18 Naveen Kumar , Alexander Pukhov , Konstantin Lotov

This paper presents a grid-free simulation algorithm for the fully three-dimensional Vlasov--Poisson system for collisionless electron plasmas. We employ a standard particle method for the numerical approximation of the distribution…

Numerical Analysis · Mathematics 2020-03-06 Torsten Keßler , Sergej Rjasanow , Steffen Weißer

We introduce a simplified model of the electron-beam/plasma system to model the electrical breakdown caused by the inductive electric field created by a rapidly rising electron beam current. The rigid-beam model is a reduction to the…

Plasma Physics · Physics 2021-03-05 S. B. Swanekamp , A. S. Richardson , Tz. B. Petrova , P. E. Adamson
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