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We introduce G2T-LLM, a novel approach for molecule generation that uses graph-to-tree text encoding to transform graph-based molecular structures into a hierarchical text format optimized for large language models (LLMs). This encoding…

Machine Learning · Computer Science 2024-10-04 Zhaoning Yu , Xiangyang Xu , Hongyang Gao

Recently, large language models (LLMs) have demonstrated superior capabilities in understanding and zero-shot learning on textual data, promising significant advances for many text-related domains. In the graph domain, various real-world…

Computation and Language · Computer Science 2024-02-21 Xuanwen Huang , Kaiqiao Han , Yang Yang , Dezheng Bao , Quanjin Tao , Ziwei Chai , Qi Zhu

Node-link diagrams are widely used to facilitate network explorations. However, when using a graph drawing technique to visualize networks, users often need to tune different algorithm-specific parameters iteratively by comparing the…

Human-Computer Interaction · Computer Science 2019-10-10 Yong Wang , Zhihua Jin , Qianwen Wang , Weiwei Cui , Tengfei Ma , Huamin Qu

Node classification on text-attributed graphs (TAGs) is a fundamental task with broad applications in citation analysis, social networks, and recommendation systems. Current GNN-based approaches suffer from shallow text encoding and heavy…

Computation and Language · Computer Science 2026-04-21 Ziqing Wang , Kaize Ding

Spectral Graph Neural Networks (SGNNs) have achieved remarkable performance in tasks such as node classification due to their ability to learn flexible filters. Typically, these filters are learned under the supervision of downstream tasks,…

Machine Learning · Computer Science 2025-08-06 Kangkang Lu , Yanhua Yu , Zhiyong Huang , Tat-Seng Chua

Large language models (LLMs) are increasingly adopted for a variety of tasks with implicit graphical structures, such as planning in robotics, multi-hop question answering or knowledge probing, structured commonsense reasoning, and more.…

Computation and Language · Computer Science 2024-01-09 Heng Wang , Shangbin Feng , Tianxing He , Zhaoxuan Tan , Xiaochuang Han , Yulia Tsvetkov

Given the success of Graph Neural Networks (GNNs) for structure-aware machine learning, many studies have explored their use for text classification, but mostly in specific domains with limited data characteristics. Moreover, some…

Computation and Language · Computer Science 2024-01-23 Margarita Bugueño , Gerard de Melo

Graph Neural Networks (GNNs) have emerged as powerful tools for learning over structured data, including text-attributed graphs (TAGs), which are common in domains such as citation networks, social platforms, and knowledge graphs. GNNs are…

Machine Learning · Computer Science 2026-04-23 Peyman Baghershahi , Gregoire Fournier , Pranav Nyati , Sourav Medya

Machine learning on graphs is an important and ubiquitous task with applications ranging from drug design to friendship recommendation in social networks. The primary challenge in this domain is finding a way to represent, or encode, graph…

Social and Information Networks · Computer Science 2018-04-11 William L. Hamilton , Rex Ying , Jure Leskovec

Graph-structured data exhibit substantial heterogeneity in where their predictive signals originate: in some domains, node-level semantics dominate, while in others, structural patterns play a central role. This structure-semantics…

Computation and Language · Computer Science 2026-04-03 Safal Thapaliya , Zehong Wang , Jiazheng Li , Ziming Li , Yanfang Ye , Chuxu Zhang

Graph embedding methods aim at finding useful graph representations by mapping nodes to a low-dimensional vector space. It is a task with important downstream applications, such as link prediction, graph reconstruction, data visualization,…

Machine Learning · Computer Science 2022-09-13 Said Kerrache , Hafida Benhidour

Language Models (LMs) are increasingly challenging the dominance of domain-specific models, such as Graph Neural Networks (GNNs) and Graph Transformers (GTs), in graph learning tasks. Following this trend, we propose a novel approach that…

Computation and Language · Computer Science 2026-01-27 Zhe Xu , Kaveh Hassani , Si Zhang , Hanqing Zeng , Michihiro Yasunaga , Limei Wang , Dongqi Fu , Ning Yao , Bo Long , Hanghang Tong

Improving the general capabilities of large language models (LLMs) is an active research topic. As a common data structure in many real-world domains, understanding graph data is a crucial part of advancing general intelligence. To this…

Artificial Intelligence · Computer Science 2025-11-19 Zihan Luo , Xiran Song , Hong Huang , Jianxun Lian , Chenhao Zhang , Jinqi Jiang , Xing Xie , Hai Jin

Although Large Language Models (LLMs) excel at addressing straightforward reasoning tasks, they frequently struggle with difficulties when confronted by more complex multi-step reasoning due to a range of factors. Firstly, natural language…

Computation and Language · Computer Science 2024-02-22 Kewei Cheng , Nesreen K. Ahmed , Theodore Willke , Yizhou Sun

Node classification is a fundamental task in graph analysis, with broad applications across various fields. Recent breakthroughs in Large Language Models (LLMs) have enabled LLM-based approaches for this task. Although many studies…

Machine Learning · Computer Science 2025-05-21 Xixi Wu , Yifei Shen , Fangzhou Ge , Caihua Shan , Yizhu Jiao , Xiangguo Sun , Hong Cheng

Real-world graphs can be difficult to interpret and visualize beyond a certain size. To address this issue, graph summarization aims to simplify and shrink a graph, while maintaining its high-level structure and characteristics. Most…

Social and Information Networks · Computer Science 2022-06-16 Dimitris Berberidis , Pierre J. Liang , Leman Akoglu

The remarkable success of large language models (LLMs) has motivated researchers to adapt them as universal predictors for various graph tasks. As a widely recognized paradigm, Graph-Tokenizing LLMs (GTokenLLMs) compress complex graph data…

Computation and Language · Computer Science 2026-05-06 Zhongjian Zhang , Yue Yu , Mengmei Zhang , Junping Du , Xiao Wang , Chuan Shi

Learning on text-attributed graphs (TAGs), in which nodes are associated with one or more texts, has been the subject of much recent work. However, most approaches tend to make strong assumptions about the downstream task of interest, are…

Computation and Language · Computer Science 2024-07-11 William Brannon , Wonjune Kang , Suyash Fulay , Hang Jiang , Brandon Roy , Deb Roy , Jad Kabbara

Recommendation systems aim to provide users with relevant suggestions, but often lack interpretability and fail to capture higher-level semantic relationships between user behaviors and profiles. In this paper, we propose a novel approach…

Information Retrieval · Computer Science 2024-01-26 Yan Wang , Zhixuan Chu , Xin Ouyang , Simeng Wang , Hongyan Hao , Yue Shen , Jinjie Gu , Siqiao Xue , James Y Zhang , Qing Cui , Longfei Li , Jun Zhou , Sheng Li

The adoption of Large Language Models (LLMs) is rapidly expanding across various tasks that involve inherent graphical structures. Graphs are integral to a wide range of applications, including motion planning for autonomous vehicles,…

Artificial Intelligence · Computer Science 2025-03-17 Piyush Gupta , Sangjae Bae , David Isele