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We incorporate hydrodynamic interactions (HI) in a coarse-grained and structure-based model of proteins by employing the Rotne-Prager hydrodynamic tensor. We study several small proteins and demonstrate that HI facilitate folding. We also…

Biomolecules · Quantitative Biology 2009-11-13 Marek Cieplak , Szymon Niewieczerzał

Exploiting the first measurements of the same ion species in O+O collisons at RHIC and LHC, we propose an experimentally accessible observable to distinguish whether collective behaviour builds up through a hydrodynamic expansion of a…

High Energy Physics - Phenomenology · Physics 2025-03-18 Sören Schlichting , Clemens Werthmann

Confinement between two parallel surfaces is found, theoretically and experimentally, to drastically affect the hydrodynamic interaction between colloid particles, changing the sign of the coupling, its decay with distance and its…

Soft Condensed Matter · Physics 2007-05-23 H. Diamant , B. Cui , B. Lin , S. A. Rice

Hydrodynamic interactions are important for diverse fluids especially those with low Reynold's number such as microbial and particle-laden suspensions, and proteins diffusing in membranes. Unfortunately, while far-field (asymptotic)…

Soft Condensed Matter · Physics 2023-02-10 Noman Hanif Barbhuiya , A. G. Yodh , Chandan K. Mishra

Colloidal dispersions are widely found in systems ranging from natural environments to industrial materials. Their macroscopic properties such as viscosity and light scattering depend on their dispersibility, which is characterized by…

Soft Condensed Matter · Physics 2026-05-22 Keita Saito , Fumito Araoka

Optically levitated dielectric nanoparticles have become valuable tools for precision sensing and quantum optomechanical experiments. To predict the dynamic properties of a particle trapped in an optical tweezer with high fidelity, a tool…

Optics · Physics 2024-11-20 Moosung Lee , Tobias Hanke , Sara Launer , Sungkun Hong

Optical tweezers are a technique in which microscopic-sized particles, including living cells and bacteria, can be non-intrusively trapped with high accuracy solely using focused light. The technique has therefore become a powerful tool in…

Biological Physics · Physics 2015-03-04 Magnus Andersson

Soft actuators that respond to external stimuli play a fundamental role in microscale robotics, active matter, and bio-inspired systems. Among these actuators, photo-thermal hybrid microgels (HMGs) containing plasmonic nanoparticles enable…

Optics · Physics 2025-07-02 S. -H. Jung , C. Zhang , N. Stauffer , F. Scheffold , L. Isa

Two-point microrheology measurements from widely separated colloidal particles approach the bulk viscosity of the host medium more reliably than corresponding single point measurements. In addition, active microrheology offers the advantage…

Applied Physics · Physics 2018-04-25 Shuvojit Paul , Randhir Kumar , Ayan Banerjee

Optical tweezers are powerful tools for high resolution study of surface properties. Such experiments are traditionally performed by studying the active or the brownian fluctuation of trapped particles in the X, Y, Z direction. Here we find…

Optics · Physics 2018-11-13 Rahul Vaipully , Dhanush Bhatt , Anand Dev Ranjan , Basudev Roy

Colloidal particles with active boundary layers - regions surrounding the particles where nonequilibrium processes produce large velocity gradients - are common in many physical, chemical and biological contexts. The velocity or stress at…

Soft Condensed Matter · Physics 2015-07-14 Rajesh Singh , Somdeb Ghose , R. Adhikari

Tracking of individual particle and studying their motion serves as a direct means to understand the dynamics in crowded and complex environments. In this study, the dynamics of tracer particles in the matrix of dense soft-colloidal…

Soft Condensed Matter · Physics 2023-06-28 Jimpaul Samukcham , Lenin S. Shagolsem

Manipulating particles, such as cells and tissues, in a flowing liquid environment is crucial for life science research. Traditional contactless tweezers, although widely used for single-cell manipulation, face several challenges. These…

Fluid Dynamics · Physics 2025-01-07 Yuhong Zhou , Fubao Yang , Jinrong Liu , Gaole Dai , Zixin Li , Xuzhi Zhou , Peng Jin , Jiping Huang

Modeling and direct numerical simulation of particle-laden flows have a tremendous variety of applications in science and engineering across a vast spectrum of scales from pollution dispersion in the atmosphere, to fluidization in the…

Current experiment techniques for vorticity measurement suffer from limited spatial and temporal resolution to resolve the small-scale eddy dynamics in turbulence. In this study, we develop a new method for direct vorticity measurement in…

Fluid Dynamics · Physics 2022-07-21 Jiaqi Li , Lei Feng , Chinmayee Panigrahi , Jiarong Hong

We demonstrate a technique for simultaneously measuring each component of the force vectors and mobility tensor of a small collection of colloidal particles based on observing a set of particle trajectories. For a few-body system of…

Soft Condensed Matter · Physics 2016-09-08 Jason W. Merrill , Sunil K. Sainis , Jerzy Blawzdziewicz , Eric R. Dufresne

We explain and demonstrate a new method of force- and position-calibration for optical tweezers with back-focal-plane photo detection. The method combines power spectral measurements of thermal motion and the response to a sinusoidal motion…

Ellipsoidal micron-sized colloidal particles can oscillate spontaneously when trapped in a focused laser beam. If two oscillating particles are held in proximity their oscillations synchronize through hydrodynamic interactions. The degree…

Fluid Dynamics · Physics 2015-03-23 Ivna Kavre , Andrej Vilfan , Dušan Babič

Motility-Induced Phase Separation (MIPS) is a distinctive phenomenon in active matter that arises from its inherent non-equilibrium nature. Despite recent progress in understanding MIPS in dry active systems, it has been debated whether…

Soft Condensed Matter · Physics 2025-10-01 Tingtao Zhou , John F. Brady

We present a dual-trap optical tweezers setup which directly measures forces using linear momentum conservation. The setup uses a counter-propagating geometry, which allows momentum measurement on each beam separately. The experimental…

Biological Physics · Physics 2013-07-04 Marco Ribezzi Crivellari , Josep M. Huguet , Felix Ritort