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Given the success of Graph Neural Networks (GNNs) for structure-aware machine learning, many studies have explored their use for text classification, but mostly in specific domains with limited data characteristics. Moreover, some…

Computation and Language · Computer Science 2024-01-23 Margarita Bugueño , Gerard de Melo

Graph Transformers (GTs) show considerable potential in graph representation learning. The architecture of GTs typically integrates Graph Neural Networks (GNNs) with global attention mechanisms either in parallel or as a precursor to…

Machine Learning · Computer Science 2026-02-04 Gang Wu , Zhengwei Wang

Currently the state of the art network models are based or depend on Discrete Event Simulation (DES). While DES is highly accurate, it is also computationally costly and cumbersome to parallelize, making it unpractical to simulate high…

Networking and Internet Architecture · Computer Science 2023-10-19 Carlos Güemes-Palau , Miquel Ferriol Galmés , Albert Cabellos-Aparicio , Pere Barlet-Ros

Various human-designed prompt engineering techniques have been proposed to improve problem solvers based on Large Language Models (LLMs), yielding many disparate code bases. We unify these approaches by describing LLM-based agents as…

Artificial Intelligence · Computer Science 2024-08-23 Mingchen Zhuge , Wenyi Wang , Louis Kirsch , Francesco Faccio , Dmitrii Khizbullin , Jürgen Schmidhuber

Graph Transformers, which incorporate self-attention and positional encoding, have recently emerged as a powerful architecture for various graph learning tasks. Despite their impressive performance, the complex non-convex interactions…

Machine Learning · Computer Science 2024-06-05 Hongkang Li , Meng Wang , Tengfei Ma , Sijia Liu , Zaixi Zhang , Pin-Yu Chen

Graph neural networks (GNNs) have become a standard paradigm for graph representation learning, yet their message passing mechanism implicitly assumes that messages can be represented by source node embeddings, an assumption that fails in…

Artificial Intelligence · Computer Science 2026-03-02 Dawei Cheng , Wenjun Wang , Mingjian Guang

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Distributional semantics based on neural approaches is a cornerstone of Natural Language Processing, with surprising connections to human meaning representation as well. Recent Transformer-based Language Models have proven capable of…

Computation and Language · Computer Science 2022-04-04 Daniel Loureiro , Alípio Mário Jorge , Jose Camacho-Collados

Graph neural networks (GNNs) demonstrate a robust capability for representation learning on graphs with complex structures, showcasing superior performance in various applications. The majority of existing GNNs employ a graph convolution…

Machine Learning · Computer Science 2025-02-19 Jinlu Wang , Jipeng Guo , Yanfeng Sun , Junbin Gao , Shaofan Wang , Yachao Yang , Baocai Yin

Large language models (LLMs) produce high-dimensional embeddings that capture rich semantic and syntactic relationships between words, sentences, and concepts. Investigating the topological structures of LLM embedding spaces via mapper…

Computational Geometry · Computer Science 2025-07-25 Xinyuan Yan , Rita Sevastjanova , Sinie van der Ben , Mennatallah El-Assady , Bei Wang

Graph learning is a prevalent domain that endeavors to learn the intricate relationships among nodes and the topological structure of graphs. Over the years, graph learning has transcended from graph theory to graph data mining. With the…

Artificial Intelligence · Computer Science 2024-09-24 Shaopeng Wei , Jun Wang , Yu Zhao , Xingyan Chen , Qing Li , Fuzhen Zhuang , Ji Liu , Fuji Ren , Gang Kou

We focus on graph-to-sequence learning, which can be framed as transducing graph structures to sequences for text generation. To capture structural information associated with graphs, we investigate the problem of encoding graphs using…

Computation and Language · Computer Science 2019-09-10 Zhijiang Guo , Yan Zhang , Zhiyang Teng , Wei Lu

The recent proliferation of publicly available graph-structured data has sparked an interest in machine learning algorithms for graph data. Since most traditional machine learning algorithms assume data to be tabular, embedding algorithms…

Machine Learning · Computer Science 2019-08-09 Sourav Mukherjee , Tim Oates , Ryan Wright

Real data collected from different applications that have additional topological structures and connection information are amenable to be represented as a weighted graph. Considering the node labeling problem, Graph Neural Networks (GNNs)…

Social and Information Networks · Computer Science 2020-02-06 Xiaoxiao Li , Joao Saude

Graph neural networks (GNNs) are deep learning models designed specifically for graph data, and they typically rely on node features as the input to the first layer. When applying such a type of network on the graph without node features,…

Although Large Language Models (LLMs) have demonstrated potential in processing graphs, they struggle with comprehending graphical structure information through prompts of graph description sequences, especially as the graph size increases.…

Computation and Language · Computer Science 2024-12-17 Yukun Cao , Shuo Han , Zengyi Gao , Zezhong Ding , Xike Xie , S. Kevin Zhou

Representation learning on graphs is a fundamental problem that can be crucial in various tasks. Graph neural networks, the dominant approach for graph representation learning, are limited in their representation power. Therefore, it can be…

Machine Learning · Computer Science 2025-01-17 Zuoyu Yan , Qi Zhao , Ze Ye , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

Large Language Models (LLM) have emerged as a tool for robots to generate task plans using common sense reasoning. For the LLM to generate actionable plans, scene context must be provided, often through a map. Recent works have shifted from…

Robotics · Computer Science 2024-09-25 Mike Zhang , Kaixian Qu , Vaishakh Patil , Cesar Cadena , Marco Hutter

Graph Neural Networks (GNNs) are deep learning methods which provide the current state of the art performance in node classification tasks. GNNs often assume homophily -- neighboring nodes having similar features and labels--, and therefore…

Machine Learning · Computer Science 2021-10-26 Liheng Ma , Reihaneh Rabbany , Adriana Romero-Soriano

Large language models (LLMs), such as GPT4 and LLaMA, are creating significant advancements in natural language processing, due to their strong text encoding/decoding ability and newly found emergent capability (e.g., reasoning). While LLMs…

Computation and Language · Computer Science 2024-11-22 Bowen Jin , Gang Liu , Chi Han , Meng Jiang , Heng Ji , Jiawei Han
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