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Calcium imaging is one of the most important tools in neurophysiology as it enables the observation of neuronal activity for hundreds of cells in parallel and at single-cell resolution. In order to use the data gained with calcium imaging,…

Neurons and Cognition · Quantitative Biology 2020-04-07 Elke Kirschbaum , Alberto Bailoni , Fred A. Hamprecht

This study addresses the issue of leveraging federated learning to improve data privacy and performance in IVF embryo selection. The EM (Expectation-Maximization) algorithm is incorporated into deep learning models to form a federated…

Image and Video Processing · Electrical Eng. & Systems 2025-01-09 Jung-Hua Wang , Huai-Wen Chang , Rong-Yu Wu , Ting-Yuan Wang , Ming-Jer Chen , Yu-Chiao Yi

Detecting synaptic clefts is a crucial step to investigate the biological function of synapses. The volume electron microscopy (EM) allows the identification of synaptic clefts by photoing EM images with high resolution and fine details.…

Computer Vision and Pattern Recognition · Computer Science 2021-01-13 Yi Liu , Shuiwang Ji

Deep learning has demonstrated significant improvements in medical image segmentation using a sufficiently large amount of training data with manual labels. Acquiring well-representative labels requires expert knowledge and exhaustive…

Computer Vision and Pattern Recognition · Computer Science 2021-06-15 Jinxi Xiang , Zhuowei Li , Wenji Wang , Qing Xia , Shaoting Zhang

We introduce a new machine learning approach for image segmentation that uses a neural network to model the conditional energy of a segmentation given an image. Our approach, combinatorial energy learning for image segmentation (CELIS)…

Computer Vision and Pattern Recognition · Computer Science 2016-09-27 Jeremy Maitin-Shepard , Viren Jain , Michal Januszewski , Peter Li , Pieter Abbeel

Deep neural network-based classifiers trained with the categorical cross-entropy (CCE) loss are sensitive to label noise in the training data. One common type of method that can mitigate the impact of label noise can be viewed as supervised…

Computer Vision and Pattern Recognition · Computer Science 2021-04-20 Aritra Ghosh , Andrew Lan

In subpopulation shift scenarios, a Curriculum Learning (CL) approach would only serve to imprint the model weights, early on, with the easily learnable spurious correlations featured. To the best of our knowledge, none of the current…

Machine Learning · Computer Science 2026-03-05 Antonio Barbalau

Collecting labeled data for the task of semantic segmentation is expensive and time-consuming, as it requires dense pixel-level annotations. While recent Convolutional Neural Network (CNN) based semantic segmentation approaches have…

Computer Vision and Pattern Recognition · Computer Science 2021-08-20 Xiangyun Zhao , Raviteja Vemulapalli , Philip Mansfield , Boqing Gong , Bradley Green , Lior Shapira , Ying Wu

Deep clustering against self-supervised learning is a very important and promising direction for unsupervised visual representation learning since it requires little domain knowledge to design pretext tasks. However, the key component,…

Computer Vision and Pattern Recognition · Computer Science 2020-08-21 Weijie Chen , Shiliang Pu , Di Xie , Shicai Yang , Yilu Guo , Luojun Lin

Weakly Supervised Semantic Segmentation (WSSS) with image-level labels aims to achieve pixel-level predictions using Class Activation Maps (CAMs). Recently, Contrastive Language-Image Pre-training (CLIP) has been introduced in WSSS.…

Computer Vision and Pattern Recognition · Computer Science 2025-04-16 Zhiwei Yang , Yucong Meng , Kexue Fu , Feilong Tang , Shuo Wang , Zhijian Song

Image super-resolution (SR) research has witnessed impressive progress thanks to the advance of convolutional neural networks (CNNs) in recent years. However, most existing SR methods are non-blind and assume that degradation has a single…

Computer Vision and Pattern Recognition · Computer Science 2021-07-05 Jiahui Zhang , Shijian Lu , Fangneng Zhan , Yingchen Yu

Hematological disorders, which involve a variety of malignant conditions and genetic diseases affecting blood formation, present significant diagnostic challenges. One such major challenge in clinical settings is differentiating…

Image and Video Processing · Electrical Eng. & Systems 2024-11-27 Buddhadev Goswami , Adithya B. Somaraj , Prantar Chakrabarti , Ravindra Gudi , Nirmal Punjabi

Semi-supervised learning has demonstrated great potential in medical image segmentation by utilizing knowledge from unlabeled data. However, most existing approaches do not explicitly capture high-level semantic relations between distant…

Computer Vision and Pattern Recognition · Computer Science 2023-12-07 Qianying Liu , Xiao Gu , Paul Henderson , Fani Deligianni

State-of-the-art natural language understanding classification models follow two-stages: pre-training a large language model on an auxiliary task, and then fine-tuning the model on a task-specific labeled dataset using cross-entropy loss.…

Computation and Language · Computer Science 2021-04-06 Beliz Gunel , Jingfei Du , Alexis Conneau , Ves Stoyanov

Accurate classification of white blood cells in peripheral blood is essential for diagnosing hematological diseases. Due to constantly evolving clinical settings, data sources, and disease classifications, it is necessary to update machine…

Computer Vision and Pattern Recognition · Computer Science 2023-08-25 Ario Sadafi , Raheleh Salehi , Armin Gruber , Sayedali Shetab Boushehri , Pascal Giehr , Nassir Navab , Carsten Marr

Semi-supervised learning (SSL) has emerged as a promising paradigm for breast ultrasound (BUS) image segmentation, but it often suffers from unstable pseudo labels under extremely limited annotations, leading to inaccurate supervision and…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Ruili Li , Jiayi Ding , Ruiyu Li , Yilun Jin , Shiwen Ge , Yuwen Zeng , Xiaoyong Zhang , Eichi Takaya , Jan Vrba , Noriyasu Homma

We present a novel method for identification of the boundary of embryonic cells (blastomeres) in Hoffman Modulation Contrast (HMC) microscopic images that are taken between day one to day three. Identification of boundaries of blastomeres…

Computer Vision and Pattern Recognition · Computer Science 2019-10-15 Shakiba Kheradmand , Parvaneh Saeedi , Jason Au , John Havelock

Understanding cell fate patterning and morphogenesis in the mammalian embryo remains a formidable challenge. Recently, in vivo models based on embryonic stem cells (ESCs) have emerged as complementary methods to quantitatively dissect the…

Tissues and Organs · Quantitative Biology 2017-12-12 Eric D. Siggia , Aryeh Warmflash

Self-supervised learning has been successfully applied to pre-train video representations, which aims at efficient adaptation from pre-training domain to downstream tasks. Existing approaches merely leverage contrastive loss to learn…

Computer Vision and Pattern Recognition · Computer Science 2021-08-24 Yuanze Lin , Xun Guo , Yan Lu

Children learn powerful internal models of the world around them from a few years of egocentric visual experience. Can such internal models be learned from a child's visual experience with highly generic learning algorithms or do they…

Computer Vision and Pattern Recognition · Computer Science 2024-10-18 A. Emin Orhan , Wentao Wang , Alex N. Wang , Mengye Ren , Brenden M. Lake