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Cell type annotation is a key task in analyzing the heterogeneity of single-cell RNA sequencing data. Although recent foundation models automate this process, they typically annotate cells independently, without considering batch-level…

Computation and Language · Computer Science 2025-06-04 Yin Fang , Qiao Jin , Guangzhi Xiong , Bowen Jin , Xianrui Zhong , Siru Ouyang , Aidong Zhang , Jiawei Han , Zhiyong Lu

Long chain-of-thought (CoT) significantly enhances the reasoning capabilities of large language models (LLMs). However, extensive reasoning traces lead to inefficiencies and increased time-to-first-token (TTFT). We propose a training…

Computation and Language · Computer Science 2026-01-08 Roy Xie , David Qiu , Deepak Gopinath , Dong Lin , Yanchao Sun , Chong Wang , Saloni Potdar , Bhuwan Dhingra

Recent advancements in large language models (LLMs), such as DeepSeek-R1 and OpenAI-o1, have demonstrated the significant effectiveness of test-time scaling, achieving substantial performance gains across various benchmarks. These advanced…

Computation and Language · Computer Science 2025-04-15 Haotian Wang , Han Zhao , Shuaiting Chen , Xiaoyu Tian , Sitong Zhao , Yunjie Ji , Yiping Peng , Xiangang Li

Test-time scaling is a promising new approach to language modeling that uses extra test-time compute to improve performance. Recently, OpenAI's o1 model showed this capability but did not publicly share its methodology, leading to many…

Large Language Models (LLMs) have demonstrated remarkable capabilities in complex tasks. Recent advancements in Large Reasoning Models (LRMs), such as OpenAI o1 and DeepSeek-R1, have further improved performance in System-2 reasoning…

Computation and Language · Computer Science 2025-08-25 Yang Sui , Yu-Neng Chuang , Guanchu Wang , Jiamu Zhang , Tianyi Zhang , Jiayi Yuan , Hongyi Liu , Andrew Wen , Shaochen Zhong , Na Zou , Hanjie Chen , Xia Hu

Open Information Extraction (OIE) aims to extract objective structured knowledge from natural texts, which has attracted growing attention to build dedicated models with human experience. As the large language models (LLMs) have exhibited…

Computation and Language · Computer Science 2023-10-17 Ji Qi , Kaixuan Ji , Xiaozhi Wang , Jifan Yu , Kaisheng Zeng , Lei Hou , Juanzi Li , Bin Xu

Recently DeepSeek R1 has shown that reinforcement learning (RL) can substantially improve the reasoning capabilities of Large Language Models (LLMs) through a simple yet effective design. The core of R1 lies in its rule-based reward…

Computer Vision and Pattern Recognition · Computer Science 2025-04-15 Haozhan Shen , Peng Liu , Jingcheng Li , Chunxin Fang , Yibo Ma , Jiajia Liao , Qiaoli Shen , Zilun Zhang , Kangjia Zhao , Qianqian Zhang , Ruochen Xu , Tiancheng Zhao

Recent advances in fine-tuning large language models (LLMs) with reinforcement learning (RL) have shown promising improvements in complex reasoning tasks, particularly when paired with chain-of-thought (CoT) prompting. However, these…

Machine Learning · Computer Science 2025-04-04 Hung Le , Dai Do , Dung Nguyen , Svetha Venkatesh

Large Language Models (LLMs) have demonstrated impressive real-world utility, exemplifying artificial useful intelligence (AUI). However, their ability to reason adaptively and robustly -- the hallmarks of artificial general intelligence…

Machine Learning · Computer Science 2025-08-27 Seungwook Han , Jyothish Pari , Samuel J. Gershman , Pulkit Agrawal

We demonstrate LLM agent specification gaming by instructing models to win against a chess engine. We find reasoning models like OpenAI o3 and DeepSeek R1 will often hack the benchmark by default, while language models like GPT-4o and…

Artificial Intelligence · Computer Science 2025-08-28 Alexander Bondarenko , Denis Volk , Dmitrii Volkov , Jeffrey Ladish

Enhancing the reasoning capabilities of large language models (LLMs) typically relies on massive computational resources and extensive datasets, limiting accessibility for resource-constrained settings. Our study investigates the potential…

Machine Learning · Computer Science 2026-01-21 Quy-Anh Dang , Chris Ngo

Large language models (LLMs) have demonstrated strong capabilities in language understanding and reasoning, yet they remain limited when tackling real-world tasks that require up-to-date knowledge, precise operations, or specialized tool…

Machine Learning · Computer Science 2025-09-17 Yabo Zhang , Yihan Zeng , Qingyun Li , Zhen Hu , Kavin Han , Wangmeng Zuo

The integration of slow-thinking mechanisms into large language models (LLMs) offers a promising way toward achieving Level 2 AGI Reasoners, as exemplified by systems like OpenAI's o1. However, several significant challenges remain,…

Computation and Language · Computer Science 2025-02-10 Xiao-Wen Yang , Xuan-Yi Zhu , Wen-Da Wei , Ding-Chu Zhang , Jie-Jing Shao , Zhi Zhou , Lan-Zhe Guo , Yu-Feng Li

The capabilities of Large Language Models (LLMs) have significantly evolved, extending from natural language processing to complex tasks like code understanding and generation. We expand the scope of LLMs' capabilities to a broader context,…

Computation and Language · Computer Science 2024-10-11 Chenyang Lyu , Lecheng Yan , Rui Xing , Wenxi Li , Younes Samih , Tianbo Ji , Longyue Wang

Large pretrained models are showing increasingly better performance in reasoning and planning tasks across different modalities, opening the possibility to leverage them for complex sequential decision making problems. In this paper, we…

Artificial Intelligence · Computer Science 2024-10-10 Martin Klissarov , Devon Hjelm , Alexander Toshev , Bogdan Mazoure

Existing benchmarks for frontier models often test specialized, "PhD-level" knowledge that is difficult for non-experts to grasp. In contrast, we present a benchmark with 613 problems based on the NPR Sunday Puzzle Challenge that requires…

Competitive programming problems increasingly serve as valuable benchmarks to evaluate the coding capabilities of large language models (LLMs) due to their complexity and ease of verification. Yet, current coding benchmarks face limitations…

Artificial Intelligence · Computer Science 2025-12-23 Kaijian Zou , Aaron Xiong , Yunxiang Zhang , Frederick Zhang , Yueqi Ren , Jirong Yang , Ayoung Lee , Shitanshu Bhushan , Lu Wang

OpenAI's o3 achieves a high score of 87.5 % on ARC-AGI, a benchmark proposed to measure intelligence. This raises the question whether systems based on Large Language Models (LLMs), particularly o3, demonstrate intelligence and progress…

Artificial Intelligence · Computer Science 2025-01-14 Rolf Pfister , Hansueli Jud

This study reveals how frontier Large Language Models LLMs can "game the system" when faced with impossible situations, a critical security and alignment concern. Using a novel textual simulation approach, we presented three leading LLMs…

Artificial Intelligence · Computer Science 2025-05-14 Lars Malmqvist

This study systematically evaluates 27 frontier Large Language Models on eight biology benchmarks spanning molecular biology, genetics, cloning, virology, and biosecurity. Models from major AI developers released between November 2022 and…

Machine Learning · Computer Science 2025-05-23 Lennart Justen