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Signal transduction within biological cells is governed by networks of interacting proteins. Communication between these proteins is mediated by signaling molecules which bind to receptors and induce stochastic transitions between different…

Molecular Networks · Quantitative Biology 2017-04-05 Gonzalo Hernandez-Hernandez , Jesse Myers , Enric Alvarez-Lacalle , Yohannes Shiferaw

Oscillations arise in many real-world systems and are associated with both functional and dysfunctional states. Whether a network can oscillate can be estimated if we know the strength of interaction between nodes. But in real-world…

Neurons and Cognition · Quantitative Biology 2023-11-16 Jie Zang , Shenquan Liu , Pascal Helson , Arvind Kumar

The dynamics of noise-resilient Boolean networks with majority functions and diverse topologies is investigated. A wide class of possible topological configurations is parametrized as a stochastic blockmodel. For this class of networks, the…

Disordered Systems and Neural Networks · Physics 2012-01-11 Tiago P. Peixoto

We find that sensory noise delivered together with a weak periodic signal not only enhances nonlinear response of neuronal networks, but also improves the synchronization of the response to the signal. We reveal this phenomenon in neuronal…

Neurons and Cognition · Quantitative Biology 2015-08-25 M. A. Lopes , K. -E. Lee , A. V. Goltsev , J. F. F. Mendes

Oscillatory synchrony is hypothesized to support the flow of information between brain regions, with different phase-locked configurations enabling activation of different effective interactions. Along these lines, past work has proposed…

Neurons and Cognition · Quantitative Biology 2022-08-26 Lia Papadopoulos , Demian Battaglia , Dani S. Bassett

The coherent stochastic resonance is observed and studied with multi-step periodic signal in continuous medium having two absorbing boundaries. The general features of this process are exihibited. The universal features at the resonance…

Condensed Matter · Physics 2009-10-31 Asish K. Dhara , Tapan Mukhopadhyay

We show that noise-induced oscillations in a gene circuit model display stochastic coherence, that is, a maximum in the regularity of the oscillations as a function of noise amplitude. The effect is manifest as a system-size effect in a…

Molecular Networks · Quantitative Biology 2009-08-05 Robert C. Hilborn , Jessie D. Erwin

We report on a hitherto unnoticed type of resonances occurring in scattering from networks (quantum graphs) which are due to the complex connectivity of the graph - its topology. We consider generic open graphs and show that any cycle leads…

Chaotic Dynamics · Physics 2015-06-12 Sven Gnutzmann , Holger Schanz , Uzy Smilansky

Organisms often use cyclic changes in the concentrations of chemicals species to precisely time biological functions. Underlying these biochemical clocks are chemical reactions and transport processes, which are inherently stochastic.…

Statistical Mechanics · Physics 2020-02-06 Clara del Junco , Suriyanarayanan Vaikuntanathan

Complex networks have recently attracted much interest due to their prevalence in nature and our daily lives [1, 2]. A critical property of a network is its resilience to random breakdown and failure [3-6], typically studied as a…

Physics and Society · Physics 2016-01-08 James P. Bagrow , Sune Lehmann , Yong-Yeol Ahn

The concept of stochastic resonance in nonlinear dynamics is applied to interpret the capacity of noisy quantum channels. The two-Pauli channel is used to illustrate the idea. The fidelity of the channel is also considered. Noise…

Quantum Physics · Physics 2008-12-18 Julian Juhi-Lian Ting

Biological systems rely on robust internal information processing: Survival depends on highly reproducible dynamics of regulatory processes. Biological information processing elements, however, are intrinsically noisy (genetic switches,…

Molecular Networks · Quantitative Biology 2009-11-10 Konstantin Klemm , Stefan Bornholdt

We study theoretically a bistable systems with time-delayed feedback driven by weak periodic force. The effective potential function and the steady-state probability density are derived. The delay time and the strength of its feedback can…

Statistical Mechanics · Physics 2009-01-15 Rui-Hua Shao , Yong Chen

We consider potential type dynamical systems in finite dimensions with two meta-stable states. They are subject to two sources of perturbation: a slow external periodic perturbation of period $T$ and a small Gaussian random perturbation of…

Probability · Mathematics 2007-05-23 Samuel Herrmann , Peter Imkeller , Dierk Peithmann

The inverse stochastic resonance (ISR) phenomenon consists in an unexpected depression in the response of a system under external noise, e.g., as observed in the behavior of the mean-firing rate in some pacemaker neurons in the presence of…

Statistical Mechanics · Physics 2018-11-01 Joaquín J. Torres , Muhammet Uzuntarla , J. Marro

Stochastic resonance is a phenomenon in which noise enhances the response of a system to an input signal. The brain is an example of a system that has to detect and transmit signals in a noisy environment, suggesting that it is a good…

Neurons and Cognition · Quantitative Biology 2017-10-16 Bertha Vázquez-Rodríguez , Andrea Avena-Koenigsberger , Olaf Sporns , Alessandra Griffa , Patric Hagmann , Hernán Larralde

A short review is presented of a recently developed computational approach which allows the study of the resistance noise over the full range of bias values, from the linear regime up to electrical breakdown. Resistance noise is described…

Disordered Systems and Neural Networks · Physics 2007-05-23 Cecilia Pennetta

Stochastic resonance describes the utility of noise in improving the detectability of weak signals in certain types of systems. It has been observed widely in natural and engineered settings, but its utility in image classification with…

Computer Vision and Pattern Recognition · Computer Science 2025-02-21 Siegfried Ludwig

Synthetic biology sets out to implement new functions in cells, and to develop a deeper understanding of biological design principles. In 2000, Elowitz and Leibler showed that by rational design of the reaction network, and using existing…

Biological Physics · Physics 2017-05-17 Joris Paijmans , David K Lubensky , Pieter Rein ten Wolde

Constriction-based Josephson weak-links display a thermal bi-stability between two states exhibiting zero and finite voltages. This manifests in experiments either as hysteresis in weak-links current voltage characteristics or as random…

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