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To represent the causal relationships between variables, a directed acyclic graph (DAG) is widely utilized in many areas, such as social sciences, epidemics, and genetics. Many causal structure learning approaches are developed to learn the…

Machine Learning · Statistics 2025-01-14 Jianian Wang , Rui Song

The discovery and analysis of network patterns are central to the scientific enterprise. In the present work, we developed and evaluated a new approach that learns the building blocks of graphs that can be used to understand and generate…

Social and Information Networks · Computer Science 2018-02-26 Salvador Aguinaga , David Chiang , Tim Weninger

The field of succinct data structures has flourished over the last 16 years. Starting from the compressed suffix array (CSA) by Grossi and Vitter (STOC 2000) and the FM-index by Ferragina and Manzini (FOCS 2000), a number of generalizations…

Data Structures and Algorithms · Computer Science 2016-09-22 Djamal Belazzougui , Fabio Cunial , Juha Kärkkäinen , Veli Mäkinen

Graph is a useful data structure to model various real life aspects like email communications, co-authorship among researchers, interactions among chemical compounds, and so on. Supporting such real life interactions produce a knowledge…

Data Structures and Algorithms · Computer Science 2016-11-11 Kifayat Ullah Khan , Waqas Nawaz , Young-Koo Lee

Identifying causal structure is central to many fields ranging from strategic decision-making to biology and economics. In this work, we propose CD-UCT, a model-based reinforcement learning method for causal discovery based on tree search…

Machine Learning · Computer Science 2024-02-14 Victor-Alexandru Darvariu , Stephen Hailes , Mirco Musolesi

String diagrams are a powerful tool for reasoning about physical processes, logic circuits, tensor networks, and many other compositional structures. The distinguishing feature of these diagrams is that edges need not be connected to…

Category Theory · Mathematics 2010-11-19 Lucas Dixon , Aleks Kissinger

We study 4 problems in string matching, namely, regular expression matching, approximate regular expression matching, string edit distance, and subsequence indexing, on a standard word RAM model of computation that allows logarithmic-sized…

Data Structures and Algorithms · Computer Science 2008-09-22 Philip Bille , Martin Farach-Colton

The feed-forward relationship naturally observed in time-dependent processes and in a diverse number of real systems -such as some food-webs and electronic and neural wiring- can be described in terms of so-called directed acyclic graphs…

Physics and Society · Physics 2015-05-19 Joaquín Goñi , Bernat Corominas-Murtra , Ricard V. Solé , Carlos Rodríguez-Caso

This paper investigates in which cases continuous optimization for directed acyclic graph (DAG) structure learning can and cannot perform well and why this happens, and suggests possible directions to make the search procedure more…

Machine Learning · Computer Science 2024-08-20 Ignavier Ng , Biwei Huang , Kun Zhang

Directed acyclic graphs (DAGs) are a class of graphs commonly used in practice, with examples that include electronic circuits, Bayesian networks, and neural architectures. While many effective encoders exist for DAGs, it remains…

Machine Learning · Computer Science 2025-05-30 Michael Sun , Orion Foo , Gang Liu , Wojciech Matusik , Jie Chen

With the increase of graph size, it becomes difficult or even impossible to visualize graph structures clearly within the limited screen space. Consequently, it is crucial to design effective visual representations for large graphs. In this…

Social and Information Networks · Computer Science 2024-08-30 Hong Zhou , Peifeng Lai , Zhida Sun , Xiangyuan Chen , Yang Chen , Huisi Wu , Yong Wang

A weighted string over an alphabet of size $\sigma$ is a string in which a set of letters may occur at each position with respective occurrence probabilities. Weighted strings, also known as position weight matrices or uncertain sequences,…

Data Structures and Algorithms · Computer Science 2015-12-09 Carl Barton , Chang Liu , Solon P. Pissis

Simulations are ubiquitous in machine learning. Especially in graph learning, simulations of Directed Acyclic Graphs (DAG) are being deployed for evaluating new algorithms. In the literature, it was recently argued that…

Machine Learning · Computer Science 2022-06-16 Jonas Seng , Matej Zečević , Devendra Singh Dhami , Kristian Kersting

The Burrows-Wheeler transform (BWT) is a reversible transform that converts a string $w$ into another string $\mathsf{BWT}(w)$. The size of the run-length encoded BWT (RLBWT) can be interpreted as a measure of repetitiveness in the class of…

Discrete Mathematics · Computer Science 2024-11-19 Hideo Bannai , Tomohiro I , Yuto Nakashima

Complex Word Identification (CWI) aims to detect words within a text that a reader may find difficult to understand. It has been shown that CWI systems can improve text simplification, readability prediction and vocabulary acquisition…

Computation and Language · Computer Science 2022-05-06 Sian Gooding , Manuel Tragut

The sense-aware contextualised word embeddings (SCWEs) encode semantic changes of words within the contextualised word embedding (CWE) spaces. Despite the superior performance of SCWEs in contextual/temporal semantic change detection (SCD)…

Computation and Language · Computer Science 2024-12-05 Taichi Aida , Danushka Bollegala

Data augmentation is a ubiquitous technique used to provide robustness to automatic speech recognition (ASR) training. However, even as so much of the ASR training process has become automated and more "end-to-end", the data augmentation…

We present an algorithm for building the extended BWT (eBWT) of a string collection from its grammar-compressed representation. Our technique exploits the string repetitions captured by the grammar to boost the computation of the eBWT.…

Genomics · Quantitative Biology 2021-02-10 Diego Diaz-Dominguez annd Gonzalo Navarro

Context-free grammars (CFGs) are the de-facto formalism for declaratively describing concrete syntax for programming languages and generating parsers. One of the major challenges in defining a desired syntax is ruling out all possible…

Programming Languages · Computer Science 2026-02-23 Yunjeong Lee , Gokul Rajiv , Ilya Sergey

In this paper we present a general procedure that allows for the reduction or expansion of any network (considered as a weighted graph). This procedure maintains the spectrum of the network's adjacency matrix up to a set of eigenvalues…

Dynamical Systems · Mathematics 2011-11-15 L. A. Bunimovich , B. Z. Webb
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